Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1764 ATGACAATGCCTCTTACTCTAAGGAATAAGCTCAAGACTCTTTGTACTTGTGGTGATGGCTGGTCTTATGCTATTTTCTGGCGCTTTCATCCACGAAATTCTTTGTTGCTGACTGCGGAAGAAGCATACTATGAAGAGCATCTGGGAGAAGAGATTGCCAACATGCATCCACAGGTCCACTTGCTGGGTGAAGGAATTGTAGGTGAAGCTGCTTTCACGGGCAAGCACAGTTGGGTGCACTCAGATGGTCTAACTCATGATTGGAATTTGACTGGCCAAAATACTTGTGAGGATGATTCTGAATTGCAGCAACAGTTCTCCTCAGGGATAAAGACTATTGTGGTCGTACCTGTCAAAGCATGGGGAGTGGTACAGTTTGGATCCAGAAAGAAGATCTTAGAGAAAGTGGAATTTTTGGAGCAAACACAAAGCGTACTCACAGAGATGGATGATGATATGGGTATGTTTGACATGCCGGGAAATGCAGTTTTACCACTGGATTGTGAAAATAATGATTTAAATGGGTTCTTGGATTCCATTTCTTCTGCAAGTCCCAACAATTCCTTCCCTTCCCAATATAACACTTATGAAGAATCAGTGGCTACATTGCAAGGAGATTCTTCTTATCTTGGTGACCAATTGAAAGGTACCATGGAAGCTCTAGTTGTATTATCAGATAGGGATAGTGCTGATGTGCTTTTGAAGCCTAACTCTTCTACGAACAATTTAATTGCCGAAAACCCATATTTTGGCGTATGTGGTAACGAATTATCTTCTTTTGATTTGTTGGAGCAACAATTGGTATCCTGTGTAAGTGCACAAGAAGATGCAGATGTGTGTTTTACAAATGAAAATGCATTTGCTACCAGCGAACTTCTAGGTCAGGATTTGGCATTGACCTCATTGTGCAGTATGGACAGAGGGTCATTTCAAGGCAAATTACAAAATTCACTCGATAACCAATATTCAACTCAGTCCAGTGTTGTGACAGATGTTGATTTTTCCTCGAGTTTAAATGCATTGCATGGACTCTCTGAGAACTTAGAGCGAGTTGATATGTCAGAAGAAATTTTGAAATTCAGCTCCATGGAAGATCTTTGCCAGTGGTTTGGTCCTTCTCCCAAGGATAGTATCTGCAAAGCAGTAATTGCATTGGATAATACCTTTTCTGAATCAACAGAATTTAATCCCACTTCCTTTGATCTGGTTGGATCTAGTTCTTTAAATGATATTTCAGTGACATGCCTAACTGGACAGAATTCCAACTCAGAGGGGAAAGAAACATCTGTAGTTATGCATAGCACTGAAAACGCTCTCTTGGATAACCTGAAACTTGATTTTAGCTATGACCAAGCTGATGAATGGTGGGGGAATATGCTTACACCAGTGGTGAGTGGTGTTACTGATACTGGCTTCTCTGAATGCATTTCAGAGTTGAATACTGATATCCCAACTGGCACCCGAAAGAGATTATTCTCAGAGTTAGGAATTGATGAGCTTTTGAGGGGTGAAGCAAATTACAATCCTTTTAATAGTTCAGAACTTGAGCATGAGTTATTACCCAATAAGAGGCAGACAGTAGAATCTTCATCAGTGAATAGAAATTCAATACCTTTCACCAACCTTCATTGGCCTGGTGTGGCTAGAGCAGACTTGACGCAGACATTTTGTGACTTAGACAGCGCAAACAATCTTCCGACAAAGAAAGATAAATTCCCAAAATTACAAACAGGCATGTGGAATGATGATAGTCATAGCATTAATATTGGGAAGGCTGTTCCAGTACACCCTCAAAAGCCAGAGGAACCCGCAAAGCCACCCAAGAAGAGGGCTAGGGCGGGGGAGAGTACTCGACCACGGCCAAAAGATCGTCAGCAGATCCAAGACTGTATTAAAGAGTTGAGAAGACTCATTCCCAATGATGGAAAGTGTAGCATTGATTCTTTGTTAGACCGCACCATCAGATACATGCTTTTCTTACAAAGTGTCGTCAAGTATTCAGACAAGCTACAGGAACCAAATGAGCCAAAGCTTATTGAACAGGCAAATAAAGTGGTTCTAAAAGACAGTGGTGCAGCGGATGGCAAAAACTGTGGCATTACATGGGCATATGAAGTAGCACACCAACCAATGCTATGCCCAATTATAGTTGAGGACATGAGTCTACCTGGCCAAATGCTTATAGAGATGCTTTGTGAGGAGCAAGGTTTCTTCCTTGAGATAATTGACATTATTCGGCATTTCGGGCTGAATATCTTGAAAGCCAAGATGGAAAGAAGGAGGAACAAACTATGGGCACGCTTTATTGTTGAGGCAAACAACAGACACGTGACAAGGATAGATGTGTTTTTGTCCCTAATCCGTTTTCTACAGCAAACAAACACCTCTGGCATTGATTCTTCTAATAAGAATTGCGACGTTATTGATGCCAATATTTAG 2439 0.4125 MTMPLTLRNKLKTLCTCGDGWSYAIFWRFHPRNSLLLTAEEAYYEEHLGEEIANMHPQVHLLGEGIVGEAAFTGKHSWVHSDGLTHDWNLTGQNTCEDDSELQQQFSSGIKTIVVVPVKAWGVVQFGSRKKILEKVEFLEQTQSVLTEMDDDMGMFDMPGNAVLPLDCENNDLNGFLDSISSASPNNSFPSQYNTYEESVATLQGDSSYLGDQLKGTMEALVVLSDRDSADVLLKPNSSTNNLIAENPYFGVCGNELSSFDLLEQQLVSCVSAQEDADVCFTNENAFATSELLGQDLALTSLCSMDRGSFQGKLQNSLDNQYSTQSSVVTDVDFSSSLNALHGLSENLERVDMSEEILKFSSMEDLCQWFGPSPKDSICKAVIALDNTFSESTEFNPTSFDLVGSSSLNDISVTCLTGQNSNSEGKETSVVMHSTENALLDNLKLDFSYDQADEWWGNMLTPVVSGVTDTGFSECISELNTDIPTGTRKRLFSELGIDELLRGEANYNPFNSSELEHELLPNKRQTVESSSVNRNSIPFTNLHWPGVARADLTQTFCDLDSANNLPTKKDKFPKLQTGMWNDDSHSINIGKAVPVHPQKPEEPAKPPKKRARAGESTRPRPKDRQQIQDCIKELRRLIPNDGKCSIDSLLDRTIRYMLFLQSVVKYSDKLQEPNEPKLIEQANKVVLKDSGAADGKNCGITWAYEVAHQPMLCPIIVEDMSLPGQMLIEMLCEEQGFFLEIIDIIRHFGLNILKAKMERRRNKLWARFIVEANNRHVTRIDVFLSLIRFLQQTNTSGIDSSNKNCDVIDANI* 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1764 812 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK (WITH NO LYSINE)-LIKE PROTEIN-RELATED 5 811 - -
Gso20g1764 812 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 624 672 IPR036638 GO:0046983
Gso20g1764 812 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 51 145 IPR025610 -
Gso20g1764 812 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 611 660 IPR011598 GO:0046983
Gso20g1764 812 MobiDBLite consensus disorder prediction 587 626 - -
Gso20g1764 812 MobiDBLite consensus disorder prediction 601 626 - -
Gso20g1764 812 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 5 811 IPR043561 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1764 Gso-Chr20 48306556 48311519 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1764 576 800 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 48.899 8.88e-59 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso20g1764 bHLH-MYC_N 2.4e-15 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1764 - - gmx:100798158 1591.25