Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1758 ATGGCAACTCGAAGATATGAGTTTGGAAGGATGAATGAGGCTAGCCACCCAGACTCCATCAGAGCTGCCTTGGTTGAATTCCTCTCCACTTGCATCTTTGTCTTTGCTGGAGAAGGCTCTGCCCTTGCTTTGCGACAAATTTACAAGGAACCAGGGTCATCAGCGGGTGAGTTAGTGGTAATTGCACTAGCTCATGCCTTTGCTCTATTTGCTGCTATTTCTGCTAGCATGCACGTGTCTGGTGGACACGTCAACCCTGCCGTCACCTTTGGTGCTCTTCTTGGTGGAAGGATCTCCGTCCTTAGAGCCCTTTACTATTGGGTGGCTCAACTTCTCGGTTCTATAGTGGCTGCTCTCTTGTTGAGGCTTGTCACTAACAACATGAGACCACAGGGGTTCAGTGTGTCAATCGGGCTTGGAGCGTTCCACGGTCTTATACTTGAGATTGCTCTGACGTTTGGTCTGATGTACACAGTGTATGCTACTGCTATTGATCCTAAAAGGGGCAGCATCGGCTCAATTGCACCCTTAGCCATTGCATTCGTTGTTGGGGCAAACATCCTCGCTGGTGGGCCGTTTGATGGGGCATGCATGAACCCTGCTCGGGCTTTTGGGCCTGCCATGGTGGGTTGGAGATGGCACTACCACTGGATCTTCTGGGTGGGCCCATTGATTGGGGCAGCCCTCGCAGCACTCCTGTATGAATACGTTATGGTCCCAATTGAGCCTCCTCATCATCAACCTTTAGCTGGTGTAGATTACTAG 765 0.5085 MATRRYEFGRMNEASHPDSIRAALVEFLSTCIFVFAGEGSALALRQIYKEPGSSAGELVVIALAHAFALFAAISASMHVSGGHVNPAVTFGALLGGRISVLRALYYWVAQLLGSIVAALLLRLVTNNMRPQGFSVSIGLGAFHGLILEIALTFGLMYTVYATAIDPKRGSIGSIAPLAIAFVVGANILAGGPFDGACMNPARAFGPAMVGWRWHYHWIFWVGPLIGAALAALLYEYVMVPIEPPHHQPLAGVDY* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1758 254 Gene3D Glycerol uptake facilitator protein. 5 242 IPR023271 -
Gso20g1758 254 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 1 254 - -
Gso20g1758 254 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso20g1758 254 SUPERFAMILY Aquaporin-like 12 245 IPR023271 -
Gso20g1758 254 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Gso20g1758 254 Pfam Major intrinsic protein 14 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso20g1758 254 TIGRFAM MIP: MIP family channel proteins 26 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso20g1758 254 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso20g1758 254 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso20g1758 254 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso20g1758 254 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso20g1758 254 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso20g1758 254 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso20g1758 254 PANTHER AQUAPORIN-8 1 254 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1758 Gso-Chr20 48248497 48250627 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1758 2 254 Major Intrinsic Protein MIP AT1G73190 67.045 9.69e-117 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1758 K09873 - gmx:100797632 494.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1758 20 48248497 48250627 Gso20g1758 20 48248497 48250627 ECH