Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1754 ATGGCTGCACCACCGACGAAGTACACCCACCACACCAAACTACTCATACCCCCCGGCCCCGAAGAAGATCCACCCAAACACCCCTATCCAAAACTCCTCAGAATAACCGTCACAGACACCGACGCAACCGACTCCTCCAGCGACGAAGAACAAACCAACTTTTCCACGCGCCACCGACACAGAAAGCTCATCAACGAGATTTCTATCGCCAGAGCTTCAGACACTCGGCGCGGCCAGAAATTCCGCGGAGTGAGACAGAGGCCTCTGGGAAAATGGTCCGCGGAGATACGAGACCCGTCGCAACGCGGTGTTCGGTTATGGTTGGGTACCTACAACACTGCAGAGGAAGCTGCTTTGGTCTACGACAACGCGGCCATTAAGCTGCGTGGACCCCACGCACTCACCAATTTCATCACGCCTCTGTTGAACGAGGATACTCACAACAAATTCCTCTTTTCTCCCACTTCCGTGCTTCACGTGTCGGAGAATAAGGTCAAAGTCCGAGGTTGTTCGCCGGTGCCGGACAGTGTGTTGTTCTGCGATGATGATTGGTCTAGTGAGTTTCTCACTGCTTCTGAGTGA 582 0.5395 MAAPPTKYTHHTKLLIPPGPEEDPPKHPYPKLLRITVTDTDATDSSSDEEQTNFSTRHRHRKLINEISIARASDTRRGQKFRGVRQRPLGKWSAEIRDPSQRGVRLWLGTYNTAEEAALVYDNAAIKLRGPHALTNFITPLLNEDTHNKFLFSPTSVLHVSENKVKVRGCSPVPDSVLFCDDDWSSEFLTASE* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1754 193 PRINTS Ethylene responsive element binding protein signature 81 92 IPR001471 GO:0003700|GO:0006355
Gso20g1754 193 PRINTS Ethylene responsive element binding protein signature 104 120 IPR001471 GO:0003700|GO:0006355
Gso20g1754 193 MobiDBLite consensus disorder prediction 1 57 - -
Gso20g1754 193 PIRSF PTI6 4 189 IPR017392 GO:0003700
Gso20g1754 193 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF1-LIKE 4 168 - -
Gso20g1754 193 SMART rav1_2 80 144 IPR001471 GO:0003700|GO:0006355
Gso20g1754 193 ProSiteProfiles AP2/ERF domain profile. 80 138 IPR001471 GO:0003700|GO:0006355
Gso20g1754 193 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 168 - -
Gso20g1754 193 SUPERFAMILY DNA-binding domain 80 138 IPR016177 GO:0003677
Gso20g1754 193 Pfam AP2 domain 80 130 IPR001471 GO:0003700|GO:0006355
Gso20g1754 193 Gene3D AP2/ERF domain 79 139 IPR036955 GO:0003700|GO:0006355
Gso20g1754 193 CDD AP2 79 137 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1754 Gso-Chr20 48219450 48220346 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1754 1 137 AP2-EREBP Transcription Factor Family AT4G27950 48.521 2.80e-37 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso20g1754 AP2 1.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1754 - - gmx:100306115 370.548