Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1749 ATGGCAACTAGACTTCAGTTTGAGAATAATTGTGAAGTTGGAGTCTTCTCAAAACTTACCAATGCCTATTGTTTGGTTGCTATTGGAGGTTCCGAAAACTTCTACAGTGCATTTGAGGCTGAGTTAGCAGATGTTATCCCTGTGGTCAAGACCTCCATTGGTGGCACTCGTATTGTTGGTCGTCTTTGTGTTGGAAACAAGAACGGGCTTCTCTTGCCCCATACCATCACAGACCAAGAGCTTCAACATTTGAGAAACAGTCTACCTGATCAAGTTGTTGTTCAGCGTATAGAAGAAAGATTATCCGCTCTGGGAAATTGTATAGCATGTAATGACCATGTGGCCCTCACACACACTGATCTTGACAAGGAAACTGAGGAGATGATTGCAGATGTTCTGGGAGTAGAAGTTTTCAGGCAGACAGTTGCCGGTAATATTCTTGTGGGCAGTTACTGTGTATTCTCCAACAGAGGTGGTTTGGTCCACCCTCATACTTCCATCGAAGACTTGGATGAACTTTCTACACTTCTTCAGGTTCCTTTGGTTGCCGGGACTGTCAATCGTGGTAGCGAAGTAATAGCTGCTGGGATGACGGTAAATGATTGGACAGCATTTTGTGGTTCAGACACCACAGCAACAGAGCTCTCTGTGATTGAGAGTGTTTTCAAGCTGAGAGAAGCCCAACCCAGCGCCATTGTCGATGAGATGAGGAAATCACTCATTGATACTTATGTCTAA 738 0.4444 MATRLQFENNCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELADVIPVVKTSIGGTRIVGRLCVGNKNGLLLPHTITDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDKETEEMIADVLGVEVFRQTVAGNILVGSYCVFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAFCGSDTTATELSVIESVFKLREAQPSAIVDEMRKSLIDTYV* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1749 245 Gene3D - 1 225 - -
Gso20g1749 245 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 245 - -
Gso20g1749 245 PIRSF Transl_init_IF-6 1 226 IPR002769 GO:0042256|GO:0043022
Gso20g1749 245 SMART eIF6neu2 3 204 IPR002769 GO:0042256|GO:0043022
Gso20g1749 245 CDD IF6 2 223 IPR002769 GO:0042256|GO:0043022
Gso20g1749 245 TIGRFAM eIF-6: putative translation initiation factor eIF-6 4 224 IPR002769 GO:0042256|GO:0043022
Gso20g1749 245 Pfam eIF-6 family 4 203 IPR002769 GO:0042256|GO:0043022
Gso20g1749 245 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 245 IPR002769 GO:0042256|GO:0043022
Gso20g1749 245 Hamap Translation initiation factor 6 [eif6]. 1 245 IPR002769 GO:0042256|GO:0043022
Gso20g1749 245 SUPERFAMILY Pentein 1 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1749 Gso-Chr20 48133555 48137777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1749 1 245 Eukaryotic Initiation Factors Gene Family AT3G55620 91.429 1.21e-173 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1749 K03264 - gmx:100777602 484.952