Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1745 ATGGAGTCTAGCAATTTTCATGCTGACAAAATGGAAGATAAAAAGATAATTATAAGATACAAGGAATGTCTGAAGAACCATGCAGCTGCAATTGGTGGCAATGCAACTGATGGCTGTGGTGAGTTCATGGCTGCTGGAGAAGAAGGCACCCTTGAAGCTCTCAAGTGCTCAGCTTGCAATTGCCACAGAAACTTTCACAGAAAAGAGATAGAGTCTTCTGATTCTAATGCCATTCCTTTGATGATTATTCCTGACACTACTCAGATAATAAGACCAATTTTGGCTCATTTATCTCCCAACAAAAGTGGCTCAATTAGTCCTTCTGATTTGTCTGATGAGAAGGAAAACGAAGATGGGATGATGATTAAGGAGGTGGAAAATCCAAATGAGAAGGTGAAGAAGAGGTTCAGAACCAAGTTCACACAAGAACAGAAGGAGAAGATGTTGGCTTTTGCAGAAAGAGCAGGGTGGAGGATACAGAAGCTAGATGAATCATTGGTGCAGAAGTTTTGCCAAGAGATTGGAATCAAAAGAAGAGTCCTCAAAGTGTGGATGCACAATAACAAGAACACTTTCGCCAAGAGAAATCCCTCAACTAGCTAG 603 0.4096 MESSNFHADKMEDKKIIIRYKECLKNHAAAIGGNATDGCGEFMAAGEEGTLEALKCSACNCHRNFHRKEIESSDSNAIPLMIIPDTTQIIRPILAHLSPNKSGSISPSDLSDEKENEDGMMIKEVENPNEKVKKRFRTKFTQEQKEKMLAFAERAGWRIQKLDESLVQKFCQEIGIKRRVLKVWMHNNKNTFAKRNPSTS* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1745 200 Pfam ZF-HD protein dimerisation region 18 70 IPR006456 -
Gso20g1745 200 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 20 69 IPR006456 -
Gso20g1745 200 Gene3D - 122 194 - -
Gso20g1745 200 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 133 190 IPR006455 -
Gso20g1745 200 SUPERFAMILY Homeodomain-like 129 194 IPR009057 -
Gso20g1745 200 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 11 195 - -
Gso20g1745 200 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 19 70 IPR006456 -
Gso20g1745 200 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 11 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1745 Gso-Chr20 48091363 48092493 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1745 14 196 ZF-HD Transcription Factor Family AT1G14440 53.030 7.80e-66 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gso20g1745 ZF-HD_dimer 3.1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1745 - - gmx:100793926 402.134