Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1743 ATGGTCGTGAGCGGAGGGAAGGGCCTCAAACGCGCCGCGAAGAAGAGAGTCACCGCCGACTTCTACGACTTCCTAACGTTCCCCACGCCGGCGCTCGCCGAGTCGGAGAACTTCGCCGGCGGACCGTTCCGCTCCAACGTGCGCGCCTTTCTGACGAAGCACGCGCTGCTTCCGCCACCGTCGGCGCTCTTTCCGCACCTGCTGACGTGGCAGATCGTCTTCCGCGTCGGCGAACTCACCGAGGGCCCCGACGCGCCGGCGGTGTGCCTCGACGTCGTCGAGGAGGATGTCGCCAGATCCAGATCCGTTTACTGCGATCAGTGCCGAGTTTTCGGTTGGAGCGGCCATCCAGTGTGCGGGAAACGTTACCATTTTATAATCAAAGCCGATGGGAGCTCCATTGGTGGGTACCACAAGCCGTGTATGTGCTGTGGAGACATCTTGCATTTGTCAGAATCCAAATGCAAGTCATGCAACCATGTGACCACCACTGATGACGTCGAAGACTGGGTGTACCACCAATTAGAAAACACAACTCATCTTTTACATGGAGTAGTCCATGCCAATGGATATGGGCACCTTCTTCGGGTTAATGGAAGAGAAGGGGGCTCTAGATTTCTTTCTGGTATTCATATTATGGATTTCTGGGATCGTCTATGCAAGACTCTTGGAGTCAGAAAAGTTAGTGTGATGGATGTTTCAAAGAAATATGGGATAGAGTATCGCATGCTCCATGCCATTATGAAGGGACATCCGTGGTATGGTGACTGGGGTTATAAATTTGGCTCTGGTAGCTATTGTCTTACTCATGAAGCATACAAGTCTGCTGTTGAAAGCCTATCCAATCTACCCTTGTCCACCTTTTCCCACGGACGGATGCCCAACTCTCGTGTGGAGGACATGATTAAATATTACCAGTCTTTGTCAGAGCACGAGCTTGTAAATATAAGGGACCTCTTTTGTTTCATAATGGGTTTGATTGGTGATGCTCACAAGACTGCATCAAATGTTGATGAGACAACCTGCAAGAAGCGTTGTTTTAATGCTTCTGGACTGTCAATGTCATGGGATAAGAGTGGCATTGAACGTGTGGAGCAAGCCATGATCAGAGTGCTGTGTGCAGTGTCTGAGTCCAAGTGGGTGAGCTGGCGTGCTCTTAGGGGTGCAGCCTCCAAGTTGGGCTCTCCAGAGCTGCTTGATTATTGCCTTGGAGAACTGGGAGGAAAAATGGTCTATGGTGGAATGGTTGTTAATAGCCAATGCAATCCTCAAACTGGAGTTTATGAGTTCAGACTTGAGGCTGCAACTGGTGCTTGCTATGGAATTTTAGCAAAGAATAATTCTCTGGGCTCGAAGTATCCATCTGAAGAAAACCTCCTACAATGCTTGAGATATTTATACGACTCTTTGCTTCATCCTCAGATGATGGTAAACTATGAAGCAGGGACAAGGACTCTTGCAATGAACTCAGCTCAGAAGCTTTTTGACTGCAAGCAGTTTGTAAAAGATTATAATCCTGAGATGTGGCCATTGTCAGATTCGCAGATGTTTCGCCTCTCATGTCATGTTGAACTTGTAGATGAATTTGAAGATTCAGAAGCTATAACTCCACCAGAATTAGTTGTGCTGCCCCTGAATGCCACGGTGGCTGAGCTTAAGAATCAAGCAGCAAATGCTTTTCAAGATGTATATCTAAGGTTCAGAAGACTTCAAGTTGATGGGCTACATGGTTATAGCGGTGTCGACGATTCCACCCAGGTCAAGCTCTTGTTAGGATCGAGAGATGTAGTTTGTGTCCGAGGAAGATGCATCGGGAAGAATGGGTTGAGCAAGTTCCGAATGGAAAGGGGACTTGAGAGGTGGACTGTAGATTGCAGCTGCGGGGCCAAGGACGATGATGGAGAGAGAATGTTGGCGTGTGATATATGTGGAGTGTGGCGACACACCAGGTGTTCTGACATCCATGATACTGATCCTGTTCCAGCTCGTTTTGTTTGCCTGAAATGCCAAAACTGTGAATCAAAACTCAAATGTAGTGGGCACTGCAAAGATGAGACCGTGACTAACGTTAGTGGTAGTAGTTGCTTCAGAAACGGCTTGCCAGTGCCATCTGATGTTATTTGA 2124 0.4826 MVVSGGKGLKRAAKKRVTADFYDFLTFPTPALAESENFAGGPFRSNVRAFLTKHALLPPPSALFPHLLTWQIVFRVGELTEGPDAPAVCLDVVEEDVARSRSVYCDQCRVFGWSGHPVCGKRYHFIIKADGSSIGGYHKPCMCCGDILHLSESKCKSCNHVTTTDDVEDWVYHQLENTTHLLHGVVHANGYGHLLRVNGREGGSRFLSGIHIMDFWDRLCKTLGVRKVSVMDVSKKYGIEYRMLHAIMKGHPWYGDWGYKFGSGSYCLTHEAYKSAVESLSNLPLSTFSHGRMPNSRVEDMIKYYQSLSEHELVNIRDLFCFIMGLIGDAHKTASNVDETTCKKRCFNASGLSMSWDKSGIERVEQAMIRVLCAVSESKWVSWRALRGAASKLGSPELLDYCLGELGGKMVYGGMVVNSQCNPQTGVYEFRLEAATGACYGILAKNNSLGSKYPSEENLLQCLRYLYDSLLHPQMMVNYEAGTRTLAMNSAQKLFDCKQFVKDYNPEMWPLSDSQMFRLSCHVELVDEFEDSEAITPPELVVLPLNATVAELKNQAANAFQDVYLRFRRLQVDGLHGYSGVDDSTQVKLLLGSRDVVCVRGRCIGKNGLSKFRMERGLERWTVDCSCGAKDDDGERMLACDICGVWRHTRCSDIHDTDPVPARFVCLKCQNCESKLKCSGHCKDETVTNVSGSSCFRNGLPVPSDVI* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1743 707 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 610 676 IPR013083 -
Gso20g1743 707 CDD PHD_MMD1_like 624 669 - -
Gso20g1743 707 ProSitePatterns Uncharacterized protein family UPF0054 signature. 183 193 IPR020549 -
Gso20g1743 707 SMART PHD_3 624 670 IPR001965 -
Gso20g1743 707 PANTHER OS01G0877500 PROTEIN 1 681 - -
Gso20g1743 707 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 681 - -
Gso20g1743 707 SUPERFAMILY FYVE/PHD zinc finger 613 671 IPR011011 -
Gso20g1743 707 Pfam PHD-finger 625 672 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1743 Gso-Chr20 48073690 48078715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1743 78 669 PHD Transcription Factor Family AT5G22260 29.653 4.81e-84 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gso20g1743 PHD 5.7e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1743 - - gmx:100793400 1474.91