Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1738 ATGTCTTCCATGGATAACCAAAAAGCAATGGAACTCTTTGAGGGCCAATCTCTTTTGTACATGCAGCTATACGGGCACCTAAGACCTATGTGTCTTAAGTGGGCTGTTCAACTAGGTATTCCAGACATAATACAGAACCATGCCAAACCCATTACAGTTTCTGACTTGGTTTCTACTCTTCAAATTTCACCATCTAAGGCTGGTTTTGTGCAGCAGTTCATGCGCTTTTTGGCACACGATGGAATCTTTGATATCCGTGAGAGCCAAGATGATCATGAATTAGCATATGCTCTAACCCCTGCATCAAAGCTTCTAGTTAGTTGCAGTGACCACTGTTTATCTCCAATGGTTCGGATGAATACTGATCCACTTCTGATGACTACATACCATCACTTTGGGGAATGGATTCGTGGGGAAGACCCCACAGTACATGAGACAGCCTTCGGAACAAGCTTTTGGGGACTTCTTGAGAAAAACCCTACACAAATGAGTCTCTTCAATGAGGCTATGGCAAGTGATTCCCGAATGGTAGACTTGGCACTCAAAAATTGCACTTCAGTTTTTGAAGGGCTAGATTCCATGGTGGATGTTGGTGGTGGAACTGGAACCACAGCCAAAATTATCTGTGAGGCATTTCCGAAGTTGAAATGTGTTGTGCTTGACCTTCCTCATGTTGTAGAAAACTTGACAGGAACCAATAATTTGAGTTTTGTCGGTGGTGATATGTTCAACTCTTTCCCTCAAACTGATGCAGTTCTACTAAAGTGGGTTTTACATAATTGGAATGACGAAAATTGCATAAAGATCCTGAAAAAGTGTAAAGATTCTATTTCAAGCAAAGGCAACAAAGGAAAAGTGATTATCATAGATATAATAATAAATGAGAAGCTAGATGATCCGGATATGACTCGAACAAAGCTTAGTTTGGATATAGTTATGTCGACTATGAATGGAAGAGAGCGAAGTGAAAAAGAATGGAAACAAATGTTCATTGAAGCGGGATTCAAACACTGCAAAATATTTCCCATCTTTGGTTTCAGATCTCTAATTGAGCTCTATCCTTAG 1065 0.4028 MSSMDNQKAMELFEGQSLLYMQLYGHLRPMCLKWAVQLGIPDIIQNHAKPITVSDLVSTLQISPSKAGFVQQFMRFLAHDGIFDIRESQDDHELAYALTPASKLLVSCSDHCLSPMVRMNTDPLLMTTYHHFGEWIRGEDPTVHETAFGTSFWGLLEKNPTQMSLFNEAMASDSRMVDLALKNCTSVFEGLDSMVDVGGGTGTTAKIICEAFPKLKCVVLDLPHVVENLTGTNNLSFVGGDMFNSFPQTDAVLLKWVLHNWNDENCIKILKKCKDSISSKGNKGKVIIIDIIINEKLDDPDMTRTKLSLDIVMSTMNGRERSEKEWKQMFIEAGFKHCKIFPIFGFRSLIELYP* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1738 354 Gene3D - 1 105 IPR036388 -
Gso20g1738 354 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 354 IPR016461 GO:0008168
Gso20g1738 354 PANTHER O-METHYLTRANSFERASE 2 353 IPR016461 GO:0008168
Gso20g1738 354 PIRSF O-mtase 1 354 IPR016461 GO:0008168
Gso20g1738 354 Pfam O-methyltransferase domain 129 336 IPR001077 GO:0008171
Gso20g1738 354 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Gso20g1738 354 PANTHER FLAVONOID 4'-O-METHYLTRANSFERASE 2 353 - -
Gso20g1738 354 Gene3D Vaccinia Virus protein VP39 107 354 IPR029063 -
Gso20g1738 354 SUPERFAMILY "Winged helix" DNA-binding domain 11 107 IPR036390 -
Gso20g1738 354 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 110 352 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1738 Gso-Chr20 48052583 48054213 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1738 17 352 Monolignol Biosynthesis Gene Families AT5G54160 33.526 2.60e-53 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1738 K22588 K13262 gmx:100818947 706.827