Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1730 ATGGTGCTTTCAGTACTACTACTTTTGTTTTCTCTTGTGTTTTTGCTCTCAAACCCAACATGGGTGTGTGGGAATGGAGAGTTAAGAGCACTGATGGATATGAAGGCCAGTTTGGACCCAGAGAGTCTTTATCTACCCTCTTGGAGTATCAATGGTGATCCATGTGACGGATCTTTCGAAGGAATAGCATGCAATGAGAAGGGTCAGGTGGCAAATGTTTCTCTGCAGGGAAAGGGTCTCTTAGGGAAGCTTTCACCAGCCATTGCTGGCCTCAAGCACTTAACTGGACTCTACTTGCATTATAACTCTTTGTATGGAGAGATACCAAGAGAGATTGGAAACTTGACTGAGCTTGTTGATTTGTATTTGAATGTGAATAATCTGTCCGGGGAAATCCCTCGTGAGATCGCCAGCATGGAGAACTTGCAAGTTTTGCAGCTTTGTTATAATCAGTTGACAGGAAGCATTCCTACACAGCTTGGTGCTTTGGAAAAGCTGAGAGTTGTTGCTTTGCAGTCAAACAATTTAACCGGTGCCATCCCTGCTAGTCTAGGTGATTTGGGTATGCTGGTGAGGCTAGATTTGAGTTCTAATAATCTCTTTGGTTCCATTCCCACTAGCCTAGCTGATGCTCTTTCACTGAAGGTTTTGGATGTTCACAACAATACCCTTTCTGGGAATGTACCTCCTGCTCTTAAGAGACTAGATGATGGATTTCTGTATGAATACAATTTGGGGTTATGTGGAGTTGGGTTTTCATCACTGAAAGCTTGCAATGCTTCGGATCGTGTCAATCCTAGCAGACCTGAACCTTATGGAGCAGCCACAAGAGATATCCCAGAAACTGCTAATGTGAAGTTACCTTGCAGGGGAACTCAATGCCTTAATTCATCAAAATCCAGTCAATCCACATCAGTTACTGCTGGCATATTTGTGGTTATAATTGCACTGTGTGCAATTGGTGTTTGGACATTCGCAATATATCGTCGAAGGAAACAAAAGCTTGGAGATTCTTTTCATATCAGTGACAGTCATCTAAACACTGATGAAGCCATTGGAGCATATAGGAAAAATGGATCTCCTTTGGTCAGCCTTGAGTACTCTACTGGATGGGACCCTTTGGCTGATAGTAGGAATTTCAATGGGTATAACCAAGATATATTCCAGAGTTTGAGGTTCAACTTGGAGGAAGTGGAGTCAGCTACTCAGTATTTCTCTGAGTTGAATCTTTTGGGTAAGAGTAGCTTTAGTGCAACATATAGAGGAGTTTTAAGAGATGGATCCGTTGTTGCTGTGAAGAGCATCAGCAAAACAAGTTGCAAGTCAGATGAAGCTGAGTTTATGAAGGGATTGCACATGTTGACCTCACTGAGGAATGATAATGTAGTGAGGTTGAGAGGATTTTGTTGTTCAAGAGGACGAGGTGAATGCTTTCTGATTTATGATTTTGTTCCTAATGGAAACCTTTCACGCTTCCTGGATGTTAAGGTAGGAGGTGGAGAAGTCCTTGAATGGTCAACTAGAGTTTCTATTGTGAAAGGGATTGCTAAAGGTATGGCATATTTACATGCATACAAAGCAAACAAGCCCGTTTTGGTTCACCAAAACATCTCAGCTGACAAAGTACTCATTGATCAGCGGTACAATCCATTACTAGCAGATTCTGGCATGTACAAGCTTCTTACTAATGATATTGTCTTCTCCGCGCTCAAGGGTAGTGCAGCAAAGGGTTACTTGGCGCCTGAATATGCCACCACTGGCCGGTTTGCCGAGACAAGCGATGTTTATGCTTTTGGGGTGCTGCTTTTCCAAATCCTTTCAGGGAAGCACGAGATCACAAGCTCAATAAGGCTTGCTGCAGAGTCTTCCAAGTACCAAGAATTTATGGACCCAAATCTCCATGGAAGATACTTTGAATATGAAGCAGCTAAACTGGCAAAGATAGCTTTGCTTTGCTCCCATGAATCTCCTTTTGAGAGGCCATCCATGGATGCCATTGTTCAAGAACTGGGGAATTGTAGTAGCTGTCTCTGA 2034 0.4282 MVLSVLLLLFSLVFLLSNPTWVCGNGELRALMDMKASLDPESLYLPSWSINGDPCDGSFEGIACNEKGQVANVSLQGKGLLGKLSPAIAGLKHLTGLYLHYNSLYGEIPREIGNLTELVDLYLNVNNLSGEIPREIASMENLQVLQLCYNQLTGSIPTQLGALEKLRVVALQSNNLTGAIPASLGDLGMLVRLDLSSNNLFGSIPTSLADALSLKVLDVHNNTLSGNVPPALKRLDDGFLYEYNLGLCGVGFSSLKACNASDRVNPSRPEPYGAATRDIPETANVKLPCRGTQCLNSSKSSQSTSVTAGIFVVIIALCAIGVWTFAIYRRRKQKLGDSFHISDSHLNTDEAIGAYRKNGSPLVSLEYSTGWDPLADSRNFNGYNQDIFQSLRFNLEEVESATQYFSELNLLGKSSFSATYRGVLRDGSVVAVKSISKTSCKSDEAEFMKGLHMLTSLRNDNVVRLRGFCCSRGRGECFLIYDFVPNGNLSRFLDVKVGGGEVLEWSTRVSIVKGIAKGMAYLHAYKANKPVLVHQNISADKVLIDQRYNPLLADSGMYKLLTNDIVFSALKGSAAKGYLAPEYATTGRFAETSDVYAFGVLLFQILSGKHEITSSIRLAAESSKYQEFMDPNLHGRYFEYEAAKLAKIALLCSHESPFERPSMDAIVQELGNCSSCL* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1730 677 SUPERFAMILY Protein kinase-like (PK-like) 381 670 IPR011009 -
Gso20g1730 677 Pfam Protein tyrosine and serine/threonine kinase 409 670 IPR001245 GO:0004672|GO:0006468
Gso20g1730 677 Gene3D Transferase(Phosphotransferase) domain 1 484 676 - -
Gso20g1730 677 ProSiteProfiles Protein kinase domain profile. 405 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1730 677 SMART LRR_typ_2 139 163 IPR003591 -
Gso20g1730 677 SMART LRR_typ_2 187 215 IPR003591 -
Gso20g1730 677 SMART LRR_typ_2 91 115 IPR003591 -
Gso20g1730 677 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 6 675 - -
Gso20g1730 677 Gene3D Phosphorylase Kinase; domain 1 375 483 - -
Gso20g1730 677 Gene3D Ribonuclease Inhibitor 21 265 IPR032675 -
Gso20g1730 677 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Gso20g1730 677 PANTHER PROTEIN NSP-INTERACTING KINASE 2-LIKE 6 675 - -
Gso20g1730 677 SUPERFAMILY L domain-like 23 234 - -
Gso20g1730 677 Pfam Leucine rich repeat 141 200 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1730 Gso-Chr20 47992361 47995818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1730 1 518 Miscellaneous Gene Families AT4G22730 54.699 0.0 564
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Gso20g1730 PK_Tyr_Ser-Thr 3.1e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1730 - - gmx:100816801 1324.3