Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1725 ATGGAGGGAAGAGAGAATTTTGGTGTTGTGGTGGGTGATGAGGCCCCAGAGAGCTTCCATGTGGCTCCTAGAATTGAGAACAACTTGGACTTTTCAAGGGCCACCGTGCCGGCGCCGGCGCCGGCGACGGAGGGGAAGAAGAAGAGAGGGAGGCCGAGGAAGTATGGGCCGGATGGGAAGCCGGCGTTGGGGGCGGTGACAGCGCTTTCGCCGATGCCGATTTCTTCGTCGATTCCGTTGACCGGCGAGTTCTCTGCTTGGAAGAGTGGTAGAGGGAGGCCTGTTGAATCTATCAAGAAGTCATCGTTTAAGTTTGAGGTTGAAAGCCCTGGACCAGTTGAGGGAATAGCATACTCAGTTGGTGCCAATTTCACACCACATGTGCTCACAGTAAATGCTGGCGAGGATGTCACTATGAAAATTATGACCTTCTCTCAACAAGGATCACGTGCTATATGCATTCTCTCAGCAACTGGGACAATTTCAAATGTTACTCTTCGTCAACCGTCTTCTTGTGGGGGTACTTTAACGTATGAGGGACTGTTTGAGATTCTTTCCTTGTCTGGTTCCTTTATGCCAACTGAGAATGGAGTTACAAGAAGTAGATCTGGTGGGATGAGTGTCTCTTTGGCTGGTCCAGATGGTCGAGTAATGGGGGGCGGACTTGCTGGTTTGTTGGTAGCTGCTGGTCCAGTGCAGGTTGTGGTGGCCAGTTTTCTTCCTGGTCACCAGTTGGAGCATAAAACCAAAAAGCAAAGGGTGGAGCATGTATCAACTATTAGCCCTTCACCTGTTAATCTTATCACTAGTGAGGAAATAAAAGTAAGTTTTGGTGGAGTAAAGCCTATTATGACCCCTGCTGCTTTTCAAGAAGAGAATATTGCTTCTTTTAACAATGTTCAAGACTCTAGGAACTCATCTGCTGATGACAAAGATCCTTTGCCTGAAAAGGAGTCTAACCTAAGCCAATCAAATGCTGAGGCTGCATGCTAA 993 0.4824 MEGRENFGVVVGDEAPESFHVAPRIENNLDFSRATVPAPAPATEGKKKRGRPRKYGPDGKPALGAVTALSPMPISSSIPLTGEFSAWKSGRGRPVESIKKSSFKFEVESPGPVEGIAYSVGANFTPHVLTVNAGEDVTMKIMTFSQQGSRAICILSATGTISNVTLRQPSSCGGTLTYEGLFEILSLSGSFMPTENGVTRSRSGGMSVSLAGPDGRVMGGGLAGLLVAAGPVQVVVASFLPGHQLEHKTKKQRVEHVSTISPSPVNLITSEEIKVSFGGVKPIMTPAAFQEENIASFNNVQDSRNSSADDKDPLPEKESNLSQSNAEAAC* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1725 330 SUPERFAMILY AF0104/ALDC/Ptd012-like 123 242 - -
Gso20g1725 330 Pfam Plants and Prokaryotes Conserved (PCC) domain 126 239 IPR005175 -
Gso20g1725 330 ProSiteProfiles PPC domain profile profile. 121 263 IPR005175 -
Gso20g1725 330 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 9 318 - -
Gso20g1725 330 MobiDBLite consensus disorder prediction 31 60 - -
Gso20g1725 330 CDD DUF296 125 239 IPR005175 -
Gso20g1725 330 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 9 318 IPR039605 GO:0003680
Gso20g1725 330 Gene3D - 126 258 - -
Gso20g1725 330 MobiDBLite consensus disorder prediction 298 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1725 Gso-Chr20 47928685 47934798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1725 36 299 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 52.787 1.44e-87 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1725 - - gmx:100789179 622.854