Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1713 ATGGAACCGCCATCGCAGCAACAGCCTCCGCAACCGCCATCGCGCACTGCCACCATCCTCGGAAAGTACCAGCTGACGCGCTTCCTCGGCCGTGGCAGCTTCGCCAAGGTCTACCAGGGGCGATCCCTCGTCGACGGTGCCGCCGTGGCCGTGAAAATCATCGACAAATCGAAAACCGTTGACGCCGGCATGGAGCCACGCATAATCCGCGAGATCGACGCCATGCGCCGCCTCCACCACCACCCTAACATCCTCAAAATCCACGAGGTGCTCGCCACCAAAACCAAGATCCACCTCGTCGTGGAGCTCGCCGCCGGCGGCGAGCTCTTCGCCAAAATCTCCCGCCGCGGAAAGCTTCCGGAGTCCACCGCGCGCCGCTACTTCCAGCAGCTCGTCTCGGCGCTCCGGTTCTGCCACCGCAACGGCGTGGCGCACCGCGACCTGAAGCCGCAGAATCTCCTCCTCGACGGCGACGGCAACCTCAAGGTCTCCGACTTCGGGCTCTCCGCGCTGCCGGAGCAGCTCAAGAACGGCCTCCTCCACACCGCCTGCGGCACGCCGGCGTACACCGCGCCGGAGATCCTCCGCCAGAGCGGCGGCTACGACGGGTCCAAGGCCGACGCTTGGTCCTGCGGCCTCATCCTCTACGTCTTCCTCGCCGGACACCTCCCATTCGAAGACACCAACATTCCCGCCATGTGTAAAAAAATTTCCCGGCGAGATTATAAGTTCCCGGAGTGGATTTCAAAACCAGCCCGTTTTGTAATCCATAAATTACTCGACCCGAACCCGGAAACCCGAATTAGCCTGGAGGCCCTGTTTGGGAATGCGTGGTTTAAAAAATCACTAAAACCGGAAACGGCGGAAGAAAACGCGTTGGGGTTCAGCTACGTGAAGAGTAGTTATAATTACGAAGGGAGTAAAAGTTCGGGTGTGACAGCGTTTGACATAATATCGATGTCTTGGGGTTTGGATTTAACGAGGTTGTTCGAAACGAAGTGGGATTCGGGGAGTAAAAGAGAGAAGAGGTTCACTTCGAGTGCGAGAGTTGAGGTGGTGGAGGAGAAGGTGAAGGAAGTGGGAGGGCTGTTGGGGTTTAAGGTTGAGGTTGGGAAGAGCAACGGTGCAATTGCGTTGCTCAAAGGGAAAGTGGCTTTGGTTTTTGAGCTCCTTGAGATTGTGCCTCATCAACTTCTTTTAGTGGCGGTTAAGGTGCTGGAGGGTGCTTTGGAGTTTGAGGAACTTCATTGGGGGGATTGGAAACATGCCTTGCAAGATCTCGTGCTCTCTTGGCACAACCAAGAATCATGA 1311 0.5698 MEPPSQQQPPQPPSRTATILGKYQLTRFLGRGSFAKVYQGRSLVDGAAVAVKIIDKSKTVDAGMEPRIIREIDAMRRLHHHPNILKIHEVLATKTKIHLVVELAAGGELFAKISRRGKLPESTARRYFQQLVSALRFCHRNGVAHRDLKPQNLLLDGDGNLKVSDFGLSALPEQLKNGLLHTACGTPAYTAPEILRQSGGYDGSKADAWSCGLILYVFLAGHLPFEDTNIPAMCKKISRRDYKFPEWISKPARFVIHKLLDPNPETRISLEALFGNAWFKKSLKPETAEENALGFSYVKSSYNYEGSKSSGVTAFDIISMSWGLDLTRLFETKWDSGSKREKRFTSSARVEVVEEKVKEVGGLLGFKVEVGKSNGAIALLKGKVALVFELLEIVPHQLLLVAVKVLEGALEFEELHWGDWKHALQDLVLSWHNQES* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1713 436 SUPERFAMILY Protein kinase-like (PK-like) 19 291 IPR011009 -
Gso20g1713 436 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 15 434 - -
Gso20g1713 436 SMART serkin_6 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1713 436 CDD CIPK_C 313 425 - -
Gso20g1713 436 Gene3D Transferase(Phosphotransferase) domain 1 15 313 - -
Gso20g1713 436 PANTHER SERINE/THREONINE KINASE 15 434 - -
Gso20g1713 436 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Gso20g1713 436 ProSiteProfiles Protein kinase domain profile. 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1713 436 Pfam NAF domain 313 369 IPR004041 GO:0007165
Gso20g1713 436 Pfam Protein kinase domain 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1713 436 Gene3D Kinase associated domain 1, KA1 314 429 - -
Gso20g1713 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
Gso20g1713 436 ProSiteProfiles NAF domain profile. 307 331 IPR018451 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1713 Gso-Chr20 47785774 47787295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1713 1 433 CBL-interacting serine-threonine protein kinases AT4G14580 58.124 1.39e-166 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gso20g1713 Pkinase 1.4e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1713 K12761 - gmx:100811834 852.047