Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1710 ATGGAAAACACTACTGTGACATATCAAACTGATCTCAACCTCAAGGCAACAGAGCTTAGACTGGGGCTTCCAGGAACAGAAGAAAGTGAGGATAAAACACTGTCAGCAGGTGCTAGAATTAACAACAAAAGACCTTTAACTGAAACCTCTGATGAGTGTGCTTCAAATGGTACTTCTAGTGCTCCACATGAGAAAACTGAAACAGCCCCTCCTGCCAAGACTAAGATAGTGGGGTGGCCACCAATCAGATCCTATAGGAAGAACAGCCTTCAGGAGAGTGAGGGTGCTGGAATTTATGTGAAAGTGAGCATGGATGGAGCCCCTTTCCTCAGAAAGATTGACTTGAAGGTCTATGGAGGCTACACACAACTCCTCAAATCTCTAGAAAATATGTTCAAGTTGACCATAGGAGAGCATTCTGAAAAAGAAGGTTATAAGGGATCTGACTATGCACCTACATATGAAGACAAAGATGGTGACTGGATGTTAGTTGGAGATGTTCCATGGGACATGTTTGTGACTTCTTGCAAAAGGCTAAGAATCATGAAAGGATCAGAGGCAAGGGGTTTGGGTTGTGCTGTATGA 585 0.4342 MENTTVTYQTDLNLKATELRLGLPGTEESEDKTLSAGARINNKRPLTETSDECASNGTSSAPHEKTETAPPAKTKIVGWPPIRSYRKNSLQESEGAGIYVKVSMDGAPFLRKIDLKVYGGYTQLLKSLENMFKLTIGEHSEKEGYKGSDYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGSEARGLGCAV* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1710 194 Gene3D - 91 194 - -
Gso20g1710 194 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 191 IPR003311 GO:0005634|GO:0006355
Gso20g1710 194 ProSiteProfiles PB1 domain profile. 97 184 IPR000270 GO:0005515
Gso20g1710 194 Pfam AUX/IAA family 54 191 IPR033389 -
Gso20g1710 194 MobiDBLite consensus disorder prediction 20 75 - -
Gso20g1710 194 PANTHER AUXIN-INDUCED PROTEIN 11 191 - -
Gso20g1710 194 SUPERFAMILY CAD & PB1 domains 88 183 - -
Gso20g1710 194 MobiDBLite consensus disorder prediction 40 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1710 Gso-Chr20 47741424 47743065 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1710 100 190 B3 DNA Binding Superfamily AT2G46530 37.363 1.40e-11 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gso20g1710 AUX_IAA 3.1e-52 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1710 K14484 - gmx:100527777 394.045