Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1708 ATGGCAACTATGCTGACAAAGGAGCATGGTCTGAACCTCAAGGAGACCGAGCTTTGCCTCGGTTTGCCTGGTGGGGGAGGCGGCGGCGGCGGCGGCGGTGGTGAGGTGGAAACTCCAAGGGCCACTGGGAAGAGAGGGTTCTCTGAGACTGTTGATCTGAAACTTAATCTTCATTCCAAGGAAGATCTGAATGAGAATCTGAAGAATGTCTCAAAGGAGAAGACCCTCCTTAAGGATCCTGCCAAGCCACCGGCTAAGGCTCAAGTGGTTGGTTGGCCACCAGTGAGGTCATACAGGAAGAACATGATGGCAGTACAAAAGGTTAGCACTGAGGATGTGGCAGAGAAGACAACAAGCAGCACTGCTAATTCTGGGGCATTTGTCAAGGTTTCCATGGATGGAGCACCTTACCTGCGCAAGGTGGACCTCACAATGTACAAAAGCTACAAAGAGTTATCTGATGCCTTGGCCAAAATGTTCAGCTCCTTCACCATGGGTAACTATGGGGCCCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGATGGATCTTCTTAACAGCTCTGAGTATGTGCCAAGCTATGAAGATAAGGATGGTGACTGGATGCTCGTGGGTGATGTCCCATGGGAGATGTTTGTTGAGTCATGCAAGCGTCTGCGAATAATGAAGGGATCAGAAGCGATTGGGCTTGCGCCAAGAGCAATGGAAAAATGCAAAAGCAGAAGCTGA 732 0.4959 MATMLTKEHGLNLKETELCLGLPGGGGGGGGGGGEVETPRATGKRGFSETVDLKLNLHSKEDLNENLKNVSKEKTLLKDPAKPPAKAQVVGWPPVRSYRKNMMAVQKVSTEDVAEKTTSSTANSGAFVKVSMDGAPYLRKVDLTMYKSYKELSDALAKMFSSFTMGNYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAMEKCKSRS* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1708 243 MobiDBLite consensus disorder prediction 23 47 - -
Gso20g1708 243 Pfam AUX/IAA family 41 234 IPR033389 -
Gso20g1708 243 ProSiteProfiles PB1 domain profile. 125 225 IPR000270 GO:0005515
Gso20g1708 243 SUPERFAMILY CAD & PB1 domains 115 224 - -
Gso20g1708 243 Gene3D - 119 237 - -
Gso20g1708 243 PANTHER AUXIN-RESPONSIVE PROTEIN IAA7 6 236 - -
Gso20g1708 243 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 236 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1708 Gso-Chr20 47696132 47698622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1708 109 233 B3 DNA Binding Superfamily AT4G23980 32.000 1.45e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gso20g1708 AUX_IAA 7e-83 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1708 K14484 - gmx:100810762 464.151