Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1702 ATGGTGAGAGCTCCTTGTTGTGAAAAGATGGGTTTGAAGAAGGGTCCTTGGGCTACCGAGGAAGATCAAATTCTCACATCTTACATCCAAAAACATGGCCATGGCAATTGGCGTGCCCTCCCAAAGCAAGCAGGCCTTCTAAGGTGTGGGAAAAGCTGCAGACTCCGCTGGATTAACTATTTGAGGCCTGATATCAAGAGAGGGAATTTCACAATTGAAGAAGAAGAAACTATCATTAAGCTGCATGAGATGTTGGGAAACAGGTGGTCAGCAATTGCAGCCAAATTGCCAGGAAGAACTGACAATGAGATAAAAAATGTTTGGCACACCAATTTGAAGAAGAGGCTGCTGAAATCAGACCAGTCCAAGCCAAGTTCCAAAAGAGCCACTAAGCCAAAAATTAAACGTTCTGATTCCAATTCCAGCATCATAACTCAATCAGAACCTGCTCATCTTAGATTCAGAGAAATGGACACAACATCAACAGCATGCAATACTTCTAGTAGTGATTTTTCATCAGTCACGGTTGGTGACAGCAAAAATATTATCAAGAGTGAAGACATAGAGTCTATGGAAACAATGCCTGTGATAGATGAGAGCTTTTGGTCAGAAGCTGCAATTGATGATGAAACCCCCACCATGTCATCACAATCTTTGATCACAATCTCAAATGACATGCCACTTCAATACCCTTTTGCTAACTATGAGGAAACTTTCCAACAGAGTCATGCTTATGATTCAAACTTTGATGATGGCATGGATTTCTGGTATGACATATTCACCAGGACCAATGATTCAATAGAATTGTCAGAGTTCTGA 819 0.4127 MVRAPCCEKMGLKKGPWATEEDQILTSYIQKHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTIEEEETIIKLHEMLGNRWSAIAAKLPGRTDNEIKNVWHTNLKKRLLKSDQSKPSSKRATKPKIKRSDSNSSIITQSEPAHLRFREMDTTSTACNTSSSDFSSVTVGDSKNIIKSEDIESMETMPVIDESFWSEAAIDDETPTMSSQSLITISNDMPLQYPFANYEETFQQSHAYDSNFDDGMDFWYDIFTRTNDSIELSEF* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1702 272 CDD SANT 69 112 IPR001005 -
Gso20g1702 272 MobiDBLite consensus disorder prediction 118 135 - -
Gso20g1702 272 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gso20g1702 272 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso20g1702 272 Gene3D - 13 66 - -
Gso20g1702 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gso20g1702 272 CDD SANT 16 61 IPR001005 -
Gso20g1702 272 MobiDBLite consensus disorder prediction 118 170 - -
Gso20g1702 272 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso20g1702 272 Gene3D - 69 144 - -
Gso20g1702 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso20g1702 272 PANTHER MYB15 1 266 - -
Gso20g1702 272 SMART sant 66 114 IPR001005 -
Gso20g1702 272 SMART sant 13 63 IPR001005 -
Gso20g1702 272 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 266 - -
Gso20g1702 272 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso20g1702 272 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1702 Gso-Chr20 47632380 47635037 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1702 1 261 MYB Transcription Factor Family AT2G31180 47.744 1.33e-79 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso20g1702 Myb_DNA-binding 4.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1702 K09422 - gmx:100807569 560.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1702 20 47632380 47635037 Gso20g1702 20 47632380 47635037 ECH