Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1699 ATGGGGCAAGGGCAATCCAAAGACGAGTTGCTCTACCAGCAAGTCAGTTATGGGAACGCCGAAGGAATCAAAACCCTTCACAGAGAAGGTGCAGGCCTAGAGTGGAGGGACAAAGATGCGAAAACCCCCTTGATTGTTGCTTGTATGAATCCTCAGCTTTATAATGTTGCCAAAACTTTGATAGAACTTGGAGCCAATGTCAATGCATTTCGTCCTGGTCGTCATGGTGGGACTCCATTGCATCATGCAGCTAAAAGGGACTTTGATAGTATTGTTAACTTACTTCTTTTGCATGGAGCCAATCCTTTAGTCTTGAATGATGATTGTCTAACTGCTCTTGAGGTTGCCAGGGCCAAAGGACACAGCAATGTTGTTCGTACAATTGAGAGTCATCTATGCTTGTTCTCCGGTTGGTTGCGCGAGTTTCATGGTCCTGGGTTTCTAGAAGTAGTAGCTCCTCAGTTGGTATCAAAGAAAGTTTGGGTGGTTGTTTTACCAGTTGGCTCCCGTACTCTTGCCAAACCTTACAAGTTGGAGCTTGCCATATATTCTAGGTTGCAGGATGCACAACCACATACTGTTATTGGACTGTGGAACGCCGATTTACAAGAACCAAAGCTTCACCAGTCTGATCCGTCAGTGACAGTTGTTAATCACACTACTAAAACACGCATTAAACTTGGGCCTGCAAGTGAGAATGACAAGCAACAACTTACATGGTTTTCTAATGCTTGCAAAGGAATTCCACAGGCAAGTCCTGCATTCTTGCAAAACAATGTGCCTACAGGTCCACCCACAGCACCACCAGATGCAGAAGACACAGAGTTGGCTATGGCCATCAGTGCATCCCTTCAGTCTGCCATGCAGGAGAGACCACCCTTTCCTGATACACAGCCAAGCTTTGATGCAAGCTCTTCAAGCAGTGCAGTGAACACAGACAATCATGGTTTTCTTGGCACACCAAATCCCAATACAAGTGATAGTGAGTTGGTACAAGAAGCTAACCCGGATGGCAATACTCAGCACCTCCAAAGCCGTGTGAATCCTAGTGCTTTGGATTTGAATCCATCCGCTCCGCCAATCACCAATGAGATTCCAGGAGATGGCCCCATTCAGTATCCATCAATTGATTTAAGCCCAGTTGATATGGCATCTCCAGATGCTGAGAAGCTTCTTAAAGAAGGAGAAAAAAGTGCCGGTGGAAGTAGTTCATCATGCGTGATATGTTTAGATGCTCCAGCAGAAGGGGCATGCATACCCTGTGGCCATGTTGCTGGATGCATGTCTTGCTTGAACGAGGTGAAATCAAAGAAATGGGGTTGCCCTGTATGTCGAGCTAAGATAGATCAAGTCATAAAGCTATATCATGTTTGA 1374 0.4563 MGQGQSKDELLYQQVSYGNAEGIKTLHREGAGLEWRDKDAKTPLIVACMNPQLYNVAKTLIELGANVNAFRPGRHGGTPLHHAAKRDFDSIVNLLLLHGANPLVLNDDCLTALEVARAKGHSNVVRTIESHLCLFSGWLREFHGPGFLEVVAPQLVSKKVWVVVLPVGSRTLAKPYKLELAIYSRLQDAQPHTVIGLWNADLQEPKLHQSDPSVTVVNHTTKTRIKLGPASENDKQQLTWFSNACKGIPQASPAFLQNNVPTGPPTAPPDAEDTELAMAISASLQSAMQERPPFPDTQPSFDASSSSSAVNTDNHGFLGTPNPNTSDSELVQEANPDGNTQHLQSRVNPSALDLNPSAPPITNEIPGDGPIQYPSIDLSPVDMASPDAEKLLKEGEKSAGGSSSSCVICLDAPAEGACIPCGHVAGCMSCLNEVKSKKWGCPVCRAKIDQVIKLYHV* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1699 457 SMART ANK_2a 75 104 IPR002110 GO:0005515
Gso20g1699 457 SMART ANK_2a 39 69 IPR002110 GO:0005515
Gso20g1699 457 SUPERFAMILY Ankyrin repeat 9 133 IPR036770 -
Gso20g1699 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 383 456 IPR013083 -
Gso20g1699 457 PANTHER ROLLING PEBBLES, ISOFORM B 1 457 - -
Gso20g1699 457 SUPERFAMILY RING/U-box 405 451 - -
Gso20g1699 457 SMART ring_2 406 444 IPR001841 -
Gso20g1699 457 Pfam Zinc finger, C3HC4 type (RING finger) 404 451 - -
Gso20g1699 457 Gene3D - 3 144 IPR036770 -
Gso20g1699 457 MobiDBLite consensus disorder prediction 287 357 - -
Gso20g1699 457 MobiDBLite consensus disorder prediction 287 372 - -
Gso20g1699 457 Pfam Ankyrin repeats (many copies) 60 116 IPR002110 GO:0005515
Gso20g1699 457 ProSiteProfiles Zinc finger RING-type profile. 406 445 IPR001841 -
Gso20g1699 457 ProSiteProfiles Ankyrin repeat region circular profile. 39 69 - -
Gso20g1699 457 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT35, PUTATIVE-RELATED 1 457 - -
Gso20g1699 457 ProSiteProfiles Ankyrin repeat region circular profile. 75 101 - -
Gso20g1699 457 ProSiteProfiles Ankyrin repeat profile. 39 72 IPR002110 GO:0005515
Gso20g1699 457 MobiDBLite consensus disorder prediction 253 272 - -
Gso20g1699 457 ProSiteProfiles Ankyrin repeat profile. 75 107 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1699 Gso-Chr20 47614473 47619919 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1699 401 454 C3H Transcription Factor Family AT3G06140 33.333 1.67e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1699 - - gmx:100805974 889.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1699 20 47614473 47619919 Gso20g1699 20 47614473 47619919 ECH