Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1670 ATGAATTCAGAGAAGTCAGTGAGTCTTGATATTTCAAGTGAAGAAAATGATCATCATGATCAAGATGATGACACTGGTGGAACCAAACGGTCTTATGAGTGCACATTCTGCAAAAGAGGCTTCACAAATGCTCAGGCTTTAGGGGGGCATATGAATATCCATAGGAAGGACAGGGCCAAGGCCAAGCAATTCACAATTGATGCTTCACCTTCAGTTAACAAATTCAACAACGATGATTCCACGGCCCTTCCTTTTGTCTCAGAAATTATGAATCAACCCACAAAGCCTAATTACTACTCCCTTTTGGAGTCTCAGATGAACTTTCAACCACCACATGCCTTTTATTATGAGTTTTGTAACTCAAGGTCTCAGCCTTTGAGTTTGAACCAAGGGCTTCATGGTGCCAATTTGAGTCTCCAAATTGGTCCGAGTCATGTTGATGATAACATTCATCAATTCAGGAGAGGAAATCAGAAAACGAGTGAAGTGGACTTGGAGCTCAGACTTGGCCATGATCCATACTGA 525 0.4171 MNSEKSVSLDISSEENDHHDQDDDTGGTKRSYECTFCKRGFTNAQALGGHMNIHRKDRAKAKQFTIDASPSVNKFNNDDSTALPFVSEIMNQPTKPNYYSLLESQMNFQPPHAFYYEFCNSRSQPLSLNQGLHGANLSLQIGPSHVDDNIHQFRRGNQKTSEVDLELRLGHDPY* 175
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1670 174 SUPERFAMILY beta-beta-alpha zinc fingers 29 58 IPR036236 -
Gso20g1670 174 Gene3D Classic Zinc Finger 6 85 - -
Gso20g1670 174 PANTHER TRANSCRIPTIONAL REGULATOR TAC1-LIKE 6 173 - -
Gso20g1670 174 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Gso20g1670 174 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Gso20g1670 174 Pfam C2H2-type zinc finger 32 56 - -
Gso20g1670 174 PANTHER OS07G0101800 PROTEIN 6 173 - -
Gso20g1670 174 MobiDBLite consensus disorder prediction 10 29 - -
Gso20g1670 174 MobiDBLite consensus disorder prediction 1 29 - -
Gso20g1670 174 SMART c2h2final6 32 54 IPR013087 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gso20g1670 Gso-Chr20 47318444 47319423 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1670 23 90 C2H2 Transcription Factor Family AT3G09290 51.471 6.86e-17 72.4
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso20g1670 zf-C2H2_6 1.7e-05 CL0361
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1670 - - gmx:102665558 348.977
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1670 20 47318444 47319423 Gso10g1672 10 43334356 43335493 GST