Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1654 ATGGAACGTGGGGTTCTTGATAGTATCATTAATAGGCTGCTTGAAGTCAGAGGCAGACCAGGGAAGCAGGTGCAACTTTCTGAGGCTGAGATCAAGCAGCTTTGTCTTGTCTCCAGGGATATCTTCTTGAGGCAGCCCAACCTCTTGGAACTCGAGGCACCAATTAAGATCTGTGGAGATGTCCATGGTCAATATTCCGACCTTCTGCGACTTTTTGAGTATGGTGGATTGCCTCCTCGTTCTAATTACTTGTTTCTAGGGGACTATGTTGATCGTGGGAAGCAAAGTTTGGAGACAATATGTCTCCTTCTGGCTTATAAAATAAAATATCCCAACAACTTTTTCCTTCTGAGGGGCAACCATGAATGTGCTTCTATAAACCGCATCTACGGATTTTATGATGAGTGTAAACGAAGGTACAATGTGAGGCTTTGGAAAGTGTTCACGGAATGTTTCAACTGCTTGCCAGTGGCAGCTCTAATTGATGAAAAGATACTTTGTATGCATGGTGGACTCTCTCCTGAGTTACACAATCTGAATCAGATAAAGAGTTTGCCGCGTCCTATTGAAGTGCCTGAAACTGGTCTACTATGTGACCTCCTTTGGTCTGATCCTAGTAGTGACATTCGGGGTTGGGGAGAGAATGACCGCGGAGTTTCCTATACTTTTGGTGCTGATAGGGTGACAGAATTCCTTCAGAAGCATGATCTTGATTTGATTTGCAGGGCCCATCAGGTCATGGAAGACGGATATGAATTCTTTGCTAACAGGCAACTTGTAACCATCTTCTCGGCTCCTAATTACTGTGGAGAGTTTGACAATGCTGGTGCTATGATGACTGTTGATGAGACACTTGTTTGCTCTTTTCAAATATTGAAGCCTGTAGAAAATAAAAAGCCTAATAAGTTTGCCTTTGGGAGCACAACTACAGTTAAGCATAGTACTCCAACAAAAACCAAGTTCCAGCAATCATTTTTTGGTGCTAAAGCATGA 993 0.43 MERGVLDSIINRLLEVRGRPGKQVQLSEAEIKQLCLVSRDIFLRQPNLLELEAPIKICGDVHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPNNFFLLRGNHECASINRIYGFYDECKRRYNVRLWKVFTECFNCLPVAALIDEKILCMHGGLSPELHNLNQIKSLPRPIEVPETGLLCDLLWSDPSSDIRGWGENDRGVSYTFGADRVTEFLQKHDLDLICRAHQVMEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMTVDETLVCSFQILKPVENKKPNKFAFGSTTTVKHSTPTKTKFQQSFFGAKA* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1654 330 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 1 322 - -
Gso20g1654 330 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Gso20g1654 330 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Gso20g1654 330 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
Gso20g1654 330 PRINTS Serine/threonine phosphatase family signature 150 176 IPR006186 GO:0016787
Gso20g1654 330 PRINTS Serine/threonine phosphatase family signature 179 206 IPR006186 GO:0016787
Gso20g1654 330 PRINTS Serine/threonine phosphatase family signature 236 256 IPR006186 GO:0016787
Gso20g1654 330 PRINTS Serine/threonine phosphatase family signature 258 274 IPR006186 GO:0016787
Gso20g1654 330 SMART pp2a_7 26 296 IPR006186 GO:0016787
Gso20g1654 330 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 1 322 - -
Gso20g1654 330 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
Gso20g1654 330 Pfam Serine-threonine protein phosphatase N-terminal domain 6 52 IPR031675 -
Gso20g1654 330 SUPERFAMILY Metallo-dependent phosphatases 18 297 IPR029052 -
Gso20g1654 330 CDD MPP_PP1_PPKL 5 294 - -
Gso20g1654 330 Pfam Calcineurin-like phosphoesterase 54 245 IPR004843 GO:0016787
Gso20g1654 330 Gene3D - 2 305 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1654 Gso-Chr20 47139455 47143946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1654 33 239 Calmodulin-binding Proteins AT5G63870 30.364 2.08e-28 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1654 K06269 - gmx:100791655 679.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1654 20 47139455 47143946 Gso10g1687 10 43533687 43537970 GST