Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1652 ATGGAGGAGCACCAGAAGGCTGGGAAGCTGCAGGGAAAGGAAGAAATGCGGTACCGCGGCGTGCGGCGGCGGCCGTGGGGAAAGTACGCGGCGGAGATAAGGGATCCATCGAAGCAAGGGTCAAGGCTGTGGTTGGGGACATTTGACACTGCTGAAGAAGCTGCTAGAGCTTATGACCGTGCAGCTTTTAACCTAAGGGGTCATCTTGCGATTCTCAATTTTCCTAGTGAGTACTATTCTCAGATAAGGGGTTCACCACCATATCCACCTCATTTAGCAACACCATCTTCCTCTTCTGGTGCACAACAGAGGCCTGTTTTTGAGATTCCGTGTTTGGATGATAAGGTGTTGGAGGATCTTCTTGGTCAGTCAGAGGAACACAAGAAGAAAAACAAGGGAGATTAA 405 0.5012 MEEHQKAGKLQGKEEMRYRGVRRRPWGKYAAEIRDPSKQGSRLWLGTFDTAEEAARAYDRAAFNLRGHLAILNFPSEYYSQIRGSPPYPPHLATPSSSSGAQQRPVFEIPCLDDKVLEDLLGQSEEHKKKNKGD* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1652 134 Pfam AP2 domain 17 68 IPR001471 GO:0003700|GO:0006355
Gso20g1652 134 CDD AP2 17 75 IPR001471 GO:0003700|GO:0006355
Gso20g1652 134 PANTHER ETHYLENE RESPONSE FACTOR 1 125 - -
Gso20g1652 134 SMART rav1_2 17 81 IPR001471 GO:0003700|GO:0006355
Gso20g1652 134 ProSiteProfiles AP2/ERF domain profile. 17 75 IPR001471 GO:0003700|GO:0006355
Gso20g1652 134 SUPERFAMILY DNA-binding domain 17 76 IPR016177 GO:0003677
Gso20g1652 134 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Gso20g1652 134 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Gso20g1652 134 Gene3D AP2/ERF domain 16 76 IPR036955 GO:0003700|GO:0006355
Gso20g1652 134 MobiDBLite consensus disorder prediction 83 105 - -
Gso20g1652 134 PANTHER DNA-BINDING DOMAIN 1 125 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1652 Gso-Chr20 47098829 47099491 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1652 15 129 AP2-EREBP Transcription Factor Family AT3G23230 62.903 1.72e-47 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso20g1652 AP2 5e-17 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1652 - - gmx:100776376 270.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1652 20 47098829 47099491 Gso10g1690 10 43578448 43579312 GST