Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1650 ATGGATCTTGTAAGCAGAAGATACTTGATTTATGCTTCACAACATGGGCCACAACCACAAGCACTTTCACCAATCACAAGTCCAGGGAGTTCAATCTTTCATCCTCACCAGCATTCTTCTAGCACCAGTTTTCCCATCATTGCAATTGCCATAATAGGAATAATGGCCACGGCTTTCTTGCTTGTGAGCTACTACATCTTTGTGATCAAGTGCTGCCTCAATTGGCACCGAATTGATGTTCTAAGACGTTTCTCTCCATCTAGAAGGCGTGAAGATCCACCACCAACATACTCACCAGGCACAGATACTCGTGGACTAGATGAGGCACTGATCCGGTTAATCCCAGTGATTCAATACAAAGCACAAGGGGATAATAGAGACTTAGAAGAGAGAAGATTCTGTGAATGTGCTGTTTGCTTGAATGAGTTTCAAGAAGATGAGAAGCTCAGGATTATACCAAATTGCTGCCATGTGTTTCACATTGATTGCATAGATGTTTGGCTTCAGAGCAATGCCAATTGCCCTCTTTGTAGAACAACCATTTCCTTGACAAGCAGATTCCACATTGATCAGCTTCTCAACCTAAGGCCTTCTTCTTCTTATCCTCATGATCAAACCCCACCTAGGGAAAACCTCATTGGTGGTGATGAAGATTTTGTTGTGATTGAATTGGGTAGTGATCATGATAGAAGCCAAAATTTGCAAGAAAGAGGCAATGCTTTGGAGTTACCAACATGTCCTATTAGTCCTTCTTCACCAAGGAAGCTATTGGAACATAGAAATGTGCAGAAGAAGAAAACAATGAAACTGCAGAAAGTGACAAGCATGGGGGATGAGTGTATTGATATTAGAGCCAAAGATGACCAGTTCTCAGTGCAACCAATAAGGAGGTCTTTCTCCATGGACTCATCAGGGGATAGACAGTTCTATTTAGCAGTTCAAGAAGCTCTGAGGCATCAGAACAGGCAAGTCAATGAGGTCAACTCCATTGAAGGTTGCAGTGGTAGTGGTAGTAGAGCCAAGAGGTCATTCTTTTCCTTTGGACATGGAAGTAGATCCAGGAGTTCTGTGCAACCTGTTTCTTTGGACCCCTAA 1095 0.4274 MDLVSRRYLIYASQHGPQPQALSPITSPGSSIFHPHQHSSSTSFPIIAIAIIGIMATAFLLVSYYIFVIKCCLNWHRIDVLRRFSPSRRREDPPPTYSPGTDTRGLDEALIRLIPVIQYKAQGDNRDLEERRFCECAVCLNEFQEDEKLRIIPNCCHVFHIDCIDVWLQSNANCPLCRTTISLTSRFHIDQLLNLRPSSSYPHDQTPPRENLIGGDEDFVVIELGSDHDRSQNLQERGNALELPTCPISPSSPRKLLEHRNVQKKKTMKLQKVTSMGDECIDIRAKDDQFSVQPIRRSFSMDSSGDRQFYLAVQEALRHQNRQVNEVNSIEGCSGSGSRAKRSFFSFGHGSRSRSSVQPVSLDP* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1650 364 MobiDBLite consensus disorder prediction 344 364 - -
Gso20g1650 364 SUPERFAMILY RING/U-box 135 184 - -
Gso20g1650 364 ProSiteProfiles Zinc finger RING-type profile. 136 178 IPR001841 -
Gso20g1650 364 PANTHER RING-H2 FINGER PROTEIN ATL16 27 363 - -
Gso20g1650 364 PANTHER RING-H2 FINGER PROTEIN ATL16 27 363 IPR044600 GO:0016567|GO:0016740
Gso20g1650 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 183 IPR013083 -
Gso20g1650 364 Pfam Ring finger domain 135 178 IPR001841 -
Gso20g1650 364 SMART ring_2 136 177 IPR001841 -
Gso20g1650 364 MobiDBLite consensus disorder prediction 348 364 - -
Gso20g1650 364 CDD RING-H2_PA-TM-RING 135 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1650 Gso-Chr20 47076991 47078857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1650 35 364 C3H Transcription Factor Family AT1G04360 50.559 5.87e-101 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1650 - - gmx:100775286 726.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1650 20 47076991 47078857 Gso10g1692 10 43595649 43597470 GST