Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1641 ATGTTGGTGTATGTATCGGCCCCCGAGAAAACGACGTGCTCCGCACCTGCCTACGCGCACGCGGCCCCACAAAACCCTAATTTCCAAGACCCTCTAAAAGCTGTGCTTATTGTTCCAACTGTGGCAAATCCTTGGTGGACGGGTCAGGGAGGGTTATCTGGGGTTGACCACCCAGGAACCCATTCACCTGGCCTAGGCAAACGCCCCTCAGACCTTGGAATCAGCGAAAACAGTGGTGGGCACAATAGAGAAGAAGATGAAGACAATAGAGATGAACCAAAAGAGGGTGCAGTTGAGGTTGGAACCCGCAGACCAAGAGGAAGACCTCCTGGATCCAAAAACAAGCCAAAACCACCCATTTTCGTGACAAGGGACAGCCCAAATACCCTGAGGAGCCACGTGATGGAGGTAACTGGAGGAGCTGATGTTGCAGAAAGTGTAGCCCAATTCGCAAGGAGGCGTCAGCGTGGGGTTTGTGTGCTCAGCGGGAGTGGCTCAGTGGCCAATGTTACTCTTAGACAGCCTTCTGCTCCTGGTGCTGTGGTGGCACTTCATGGAAGGTTCGAGATTCTGTCCCTAACCGGGACTTTCCTACCTGGTCCTGCTCCTCCAGGATCCACAGGACTCACCGTGTATCTGACGGGAGGACAGGGCCAGATAGTGGGAGGGAGTGTGGTTGGATCTCTAGTTGCAGCAGGACCAGTGATGGTCATTGCTGCAACTTTTGCTAATGCAACATATGAGAGACTTCCACTTGATGAGGATGATGAGGGGCCCAGTTCAGCGGCGGGGGCGCAAGGTGGAGGATCGTCGCCACCCCCACCGCTTGGAATTGGAAGCAGTGGGGGTGGACAGTTGCAGGGTGGGATGCCAGATCCATCATCTATGCCTTTGTATAATCTTCCACCAAATGGAGGAGTGGGGCAGGTAGGGCATGAAGCTCTTGCTTGGGCTCATGGACGAGCACCTTTCTGA 975 0.5436 MLVYVSAPEKTTCSAPAYAHAAPQNPNFQDPLKAVLIVPTVANPWWTGQGGLSGVDHPGTHSPGLGKRPSDLGISENSGGHNREEDEDNRDEPKEGAVEVGTRRPRGRPPGSKNKPKPPIFVTRDSPNTLRSHVMEVTGGADVAESVAQFARRRQRGVCVLSGSGSVANVTLRQPSAPGAVVALHGRFEILSLTGTFLPGPAPPGSTGLTVYLTGGQGQIVGGSVVGSLVAAGPVMVIAATFANATYERLPLDEDDEGPSSAAGAQGGGSSPPPPLGIGSSGGGQLQGGMPDPSSMPLYNLPPNGGVGQVGHEALAWAHGRAPF* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1641 324 MobiDBLite consensus disorder prediction 49 126 - -
Gso20g1641 324 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 63 324 IPR014476 GO:0003680
Gso20g1641 324 SUPERFAMILY AF0104/ALDC/Ptd012-like 128 255 - -
Gso20g1641 324 Pfam Plants and Prokaryotes Conserved (PCC) domain 131 243 IPR005175 -
Gso20g1641 324 MobiDBLite consensus disorder prediction 251 305 - -
Gso20g1641 324 MobiDBLite consensus disorder prediction 78 102 - -
Gso20g1641 324 CDD DUF296 131 242 IPR005175 -
Gso20g1641 324 Gene3D - 130 257 - -
Gso20g1641 324 ProSiteProfiles PPC domain profile profile. 127 264 IPR005175 -
Gso20g1641 324 PANTHER DNA-BINDING PROTEIN-LIKE 63 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1641 Gso-Chr20 46993427 46995631 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1641 41 324 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 60.606 8.44e-99 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1641 - - gmx:100798994 439.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1641 20 46993427 46995631 Gso10g1702 10 43710103 43711348 GST