Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1640 ATGTTAAAAGCAGTGGCATCTGGGCTTGTGATTACTTCTATCCTCATATGTGTATCTGCAAATGATAATGGATTTCCTAGATGTAACTGTGATGATGAGGCCAGCTTGTGGACTATTGAAAGCATTCTGGAGTGTCAGAGAGTTGGTGATTTCTTGATTGCTGTGGCCTACTTCTCTATCCCTATTGAGCTGCTTTATTTTATCAGTTGCTCAAACGTCCCATTCAAATGGGTCCTGATTCAGTTCATTGCCTTCATTGTACTATGTGGATTGACACATTTGCTGAATGGGTGGACCTATGGCCCTCACACTTTCCAACTTATGGTGGCACTTACTGTCTCCAAAATACTCACTGCATTGGTGTCATGTGCCACTGCCATAACCCTCATCACTCTGATCCCATTGCTTCTCAAAGTGAAGGTCAGAGAGTTCATGCTGAAGAAAAAGACGTGGGATCTTGGACGTGAGGTTGATCATATTATGAGACAAAAGGAGGCTGCAATGCATGTAAGAATGCTTACTCAGGAGATACGTAAGTCACTCGATAGACATACGATTCTGTATACCACTTTGGTGGAGCTGTCTAAAACACTTGGCTTGCAAAATTGTGCTGTGTGGATGCCTAATGTTGATAAGACTGAGATGAACCTCACTCATGAATTGAATGGGAGGAATTTTAATTTGACTATACGCATTACTGATCCAGATGTTGTGAGAATTAAGGGAAGTGACGGTGTAAATATACTCAGCTCCGACTCAGCACTTGCTGTTGGGAGTAGAGGAGTTTCTGGAGAGGCAGGACCGGTTGCAGCAATTCGAATGCCAATGCTACGGGTTTGTAATTTCAAAGGAGGAACACCTGAGCTAAGACAGGCTTGTTATGCTATATTGGTCTTAATTCTTCCTTCTGGAGATAATCAGGAGCCTAGATCGTGGAGCAATCAGGAGCTGGAGATAATTAAGGTGGTTGCTGATCAGGTCGCAGTGGCTCTATCTCATGCTGCAATTCTTGAAGAGTCCCAACTTATGAGAGAGAAGTTGGAGGAGCAAAATCGAGCTTTGCAACAGGCAAAAAGGAATGCTTTGATGGCAAGCCAGGCAAGAAATGCATTTCAGAAAGTCATGAGTGATGGAATGAGGAGGCCAATGCACTCAATTTTGGGACTGCTTTCAATGATACAAGACGATAAATTAAAGAGTGAACAGAAACTTATTGTGGACGCGATGCTAAGGACCAGTAATGTCCTATCAAACTTGATAAACGATGCCATGGATAACTCAACTAAGGATGAAGGAAGATTTCCTTTGGAGATAAGGTCTTTTGGGTTACATTCCATGCTGAAGGAAGCAGCTTGTCTTTCCAAGTGCATGTGTGTTTATAAGGGCTTTGGTTTTATGGTTGAGGTTGAGAAGTGTTTGCCTGACAATGTTATGGGTGATGAGAGGAGGGTTTTTCAGGTAATTTTGCATATGGTTGGGAACCTACTGGAACACAACCATGGGGGAGGGATCCTTGTATATCGAGTTTTTGCAGAAACTGGAAGTCAGGGAAGGAGTGACAAAGGGTGGACAACCTGGAGACCAAGCTCTTCTAGTGGTGATGTAAATATTAGATTTGAGATAGGGATCAACAGTAGTGATTCTGAAGTTGGGAGCTCAATTTCTTCAGGATTTGGGGGTAGAAAATATAGCAGTGATAGGGTTGGGGGCAGATTGAGCTTCAGCATTTGCAAGAGGGTAGTCCAGTTGATGCAGGGGAACATATGGTTAGTACCTTGTAATCATGGTTTTCCTCAAAGCATGACTCTTCTTCTTCGGTTTCAATTACGACCGTCCATTTCCATAGCCATCTCTGACCCTGGAGAAGGTTCAGAGCGCACTGATTCCAATTCAATGCTGAGAAATCTGCAAGTTCTTTTAGTCGAAAATGATGATGTAAATAGAGCAGTGACCCAAAGATTGCTTCAGAAACTAGGTTGTGTTGTAACTCCTGTTGCTTCAGGATTTGAATGCCTTACTGTCATTGGACCTGCAGGATGTTCTATTCAAGTCATTCTTTTAGATCTTCACATGCCTGATTTAGATGGCTTTGAGGTTGCCACGAGGATTCGGAAGTTTAGAAGTGGTAATCAACCTATGATTGTTGCCTTGACTGCAAGTGCAGAAGAAGATTTGTGGGAAAGATGCATGCAAGTTGGTATTAATGGAGTTATCCGCAAGCCAGTTTTGTTGCATGGAATTGCTAGTGAACTCAGAAGAATCCTCATGCAGGGAAATAATGTCCTTTGA 2289 0.4268 MLKAVASGLVITSILICVSANDNGFPRCNCDDEASLWTIESILECQRVGDFLIAVAYFSIPIELLYFISCSNVPFKWVLIQFIAFIVLCGLTHLLNGWTYGPHTFQLMVALTVSKILTALVSCATAITLITLIPLLLKVKVREFMLKKKTWDLGREVDHIMRQKEAAMHVRMLTQEIRKSLDRHTILYTTLVELSKTLGLQNCAVWMPNVDKTEMNLTHELNGRNFNLTIRITDPDVVRIKGSDGVNILSSDSALAVGSRGVSGEAGPVAAIRMPMLRVCNFKGGTPELRQACYAILVLILPSGDNQEPRSWSNQELEIIKVVADQVAVALSHAAILEESQLMREKLEEQNRALQQAKRNALMASQARNAFQKVMSDGMRRPMHSILGLLSMIQDDKLKSEQKLIVDAMLRTSNVLSNLINDAMDNSTKDEGRFPLEIRSFGLHSMLKEAACLSKCMCVYKGFGFMVEVEKCLPDNVMGDERRVFQVILHMVGNLLEHNHGGGILVYRVFAETGSQGRSDKGWTTWRPSSSSGDVNIRFEIGINSSDSEVGSSISSGFGGRKYSSDRVGGRLSFSICKRVVQLMQGNIWLVPCNHGFPQSMTLLLRFQLRPSISIAISDPGEGSERTDSNSMLRNLQVLLVENDDVNRAVTQRLLQKLGCVVTPVASGFECLTVIGPAGCSIQVILLDLHMPDLDGFEVATRIRKFRSGNQPMIVALTASAEEDLWERCMQVGINGVIRKPVLLHGIASELRRILMQGNNVL* 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1640 762 SUPERFAMILY GAF domain-like 185 334 - -
Gso20g1640 762 Gene3D - 431 609 IPR036890 -
Gso20g1640 762 Pfam GAF domain 182 331 IPR003018 GO:0005515
Gso20g1640 762 Gene3D - 331 430 - -
Gso20g1640 762 Gene3D - 636 760 - -
Gso20g1640 762 ProSiteProfiles Response regulatory domain profile. 637 755 IPR001789 GO:0000160
Gso20g1640 762 Coils Coil 337 367 - -
Gso20g1640 762 SMART HisKA_10 367 432 IPR003661 GO:0000155|GO:0007165
Gso20g1640 762 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 352 433 IPR036097 GO:0000155|GO:0007165
Gso20g1640 762 SMART REC_2 636 755 IPR001789 GO:0000160
Gso20g1640 762 CDD HATPase_ETR2_ERS2-EIN4-like 473 605 - -
Gso20g1640 762 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 436 593 IPR036890 -
Gso20g1640 762 Gene3D - 172 330 IPR029016 -
Gso20g1640 762 ProSiteProfiles Histidine kinase domain profile. 374 588 IPR005467 -
Gso20g1640 762 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 479 599 IPR003594 -
Gso20g1640 762 Pfam His Kinase A (phospho-acceptor) domain 368 432 IPR003661 GO:0000155|GO:0007165
Gso20g1640 762 Pfam Response regulator receiver domain 638 742 IPR001789 GO:0000160
Gso20g1640 762 CDD HisKA 365 427 IPR003661 GO:0000155|GO:0007165
Gso20g1640 762 SMART gaf_1 182 341 IPR003018 GO:0005515
Gso20g1640 762 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 11 759 - -
Gso20g1640 762 PANTHER ETHYLENE RESPONSE SENSOR 2 11 759 - -
Gso20g1640 762 PIRSF Ethylen_sen_hybr_HK 1 762 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Gso20g1640 762 SUPERFAMILY CheY-like 633 755 IPR011006 -
Gso20g1640 762 CDD REC_ETR-like 636 751 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1640 Gso-Chr20 46971320 46975677 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1640 20 755 Miscellaneous Gene Families AT3G04580 57.487 0.0 819
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso20g1640 GAF 4e-12 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1640 K14509 - gmx:100787425 1485.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1640 20 46971320 46975677 Gso10g1703 10 43722744 43727098 GST