Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1628 ATGTTGCAGGATGTTTTTGATCAGCCACTGCCACCAAAGGCCGAACCACAACAGCAACTTCCCCTTGATGAAATTTCAAGCCCTCTTAGTGCTCGAATCTTCGAACTTTGTAACACTGATTTTTTTCCAGAGGCTTTGCAAAATTCTGAGGTTACTTCCAGCTCAAACTGTTGTTACGAGGAGAACTCCTCATATGCCACAACAAATATATCTGTAACTGTAGATGTAGACAATAAGTTGAATAGCAATAGCAACACAGTCACCACCCCAACTAGCACTACCACCACCAACACCAACAACAACACAACCAACAGTAGTAACCTGTCTATTTTCTTTGACTCCCAAGAAGAGATTGACAATGACATTTCTGCCTCCATAGACTTCTCACTCTCTCCATCTTTCAATGTTCCCCCATTTCTCCCAGTCTCATCCCAGCAAGAACAGTTTGATTTCTCTTCTGTGCAGCATCAGGTCCAACTAGCAGCATGTTCGGTTGTGGAGGGCTTCACTCAGTATCCCACTGACGCTGTTGCACCTCCTTTTATGGGGGCTCCATTACCTTCTGTTTTTGAAGAGGACTGCATATCTTCAGTCCCTTCTTATATGCCTCTTAACCCCTCATCTCCTTGCACTTATCTCAGTCCTGGCATGCCACCATACATGCCTCATGGCCCCCTTACTACTGCCTTATCAACTGATAGTTCTGGAATATTTGGTGGGAACATTCTTCTTGGTTCTGAACTTCAGACACAAGAATTGGAATACCAAGGAGAAAATGGAAGAATGTATTGTACAGATTCAATTCAGCGGGTGTTTAACCCTCCAGACCTTCAGGCACTTGGTACTGAGAGCCAGCAACTAGTACCCGGGGCTGGTGGTTCTGGCACTCTAACACCAGAAATCTCAAACTTAGAGGACTCCTCCTTCAAGGTTGGAAAACTTTCTGTTGAGCAAAGGAAAGAAAAGATCAATAGATACATGAAGAAAAGAAATGAAAGAAACTTCAGCAAGAAAATTAAGTATGCCTGCCGCAAAACTCTGGCAGATAGCCGACCTCGAGTTAGAGGAAGGTTTGCAAAGAATGATGACTTTGGAGAAACCAATAGAACTACAAGTAGCAATCATGAAGAAGATGATGAAGAAGAAGTAGTTATGAAAGATGAAGATGATATGGTTGATTCCTCAGATATCTTCGCTCATATCAGTGGGCTGAACTCCTTCAAATGCAACTATTCCATCCAGTCCTGGATTTGA 1254 0.4306 MLQDVFDQPLPPKAEPQQQLPLDEISSPLSARIFELCNTDFFPEALQNSEVTSSSNCCYEENSSYATTNISVTVDVDNKLNSNSNTVTTPTSTTTTNTNNNTTNSSNLSIFFDSQEEIDNDISASIDFSLSPSFNVPPFLPVSSQQEQFDFSSVQHQVQLAACSVVEGFTQYPTDAVAPPFMGAPLPSVFEEDCISSVPSYMPLNPSSPCTYLSPGMPPYMPHGPLTTALSTDSSGIFGGNILLGSELQTQELEYQGENGRMYCTDSIQRVFNPPDLQALGTESQQLVPGAGGSGTLTPEISNLEDSSFKVGKLSVEQRKEKINRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDDFGETNRTTSSNHEEDDEEEVVMKDEDDMVDSSDIFAHISGLNSFKCNYSIQSWI* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1628 417 MobiDBLite consensus disorder prediction 354 383 - -
Gso20g1628 417 Pfam CCT motif 319 361 IPR010402 GO:0005515
Gso20g1628 417 MobiDBLite consensus disorder prediction 1 21 - -
Gso20g1628 417 PANTHER CCT MOTIF FAMILY PROTEIN 22 417 - -
Gso20g1628 417 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 22 417 - -
Gso20g1628 417 MobiDBLite consensus disorder prediction 354 376 - -
Gso20g1628 417 ProSiteProfiles CCT domain profile. 319 361 IPR010402 GO:0005515
Gso20g1628 417 MobiDBLite consensus disorder prediction 81 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1628 Gso-Chr20 46830804 46834808 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1628 299 368 C2C2-CO-like Transcription Factor Family AT5G24930 40.000 3.29e-11 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso20g1628 CCT 3.6e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1628 - - gmx:100813806 731.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1628 20 46830804 46834808 Gso20g1628 20 46830804 46834808 ECH
Gso20g1628 20 46830804 46834808 Gso10g1716 10 43880810 43885063 GST