Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1617 ATGGCAGGAAACATGGGGTGGGGTGTGATAGAAGAGGAGGGATGGAGGAAGGGACCTTGGACTTCTGAGGAGGACAGATTGCTCATTCTGTATGTCAAGTTCCATGGTGAGGGCAGATGGAACTCTGCTGCTAGGCTTGCAGGACTGAAAAGAAATGGGAAGAGCTGCAGATTGAGATGGGTGAATTACCTGAGGCCAGACCTCAAGAAGGGTCAAATAACACCACAAGAAGAAAGCATAATTCAAGAGCTGCATGCTAGGTGGGGAAACAGGTGGTCAACAATTGCAAGAAGCTTGCCAGGAAGAACTGACAATGAGATAAAGAATTATTGGAGGACTCACTTCAAGAAAAAGATGAAAACTCCATCTGATGCTGCTGAGAAGGCGAGAATCCACTCCTCGAGGAGACAGCATTTTCAGCAGCAACAACAGCAGTTGAAGCAGCAGCAGCAACAATTCCAATTCAACTTGGACATGAAAGGGATCATAAACTTGCTTGAGGAAAATGACCATAGAGTGCCTTCTATATCTCAAGAGGCACAAGAAATGGCCAGCATGTACCCAAACACTTCAGAACACCAGGGCTACTTCTACTCAATGTTCAATGTCAATGACAATGACAATAATGTCTCTGCACCTGAGTCCTCAAATGAAGAAATTCTATGGGATGGACTGTGGAACTTGGACGATGTTCTTTGCAATTTCAATGCAGCTAGTGCCACAAGCAAAGCCAGTTTACACAATTTAGTTTCTCCTTTCTGTTAA 765 0.4458 MAGNMGWGVIEEEGWRKGPWTSEEDRLLILYVKFHGEGRWNSAARLAGLKRNGKSCRLRWVNYLRPDLKKGQITPQEESIIQELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKMKTPSDAAEKARIHSSRRQHFQQQQQQLKQQQQQFQFNLDMKGIINLLEENDHRVPSISQEAQEMASMYPNTSEHQGYFYSMFNVNDNDNNVSAPESSNEEILWDGLWNLDDVLCNFNAASATSKASLHNLVSPFC* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1617 254 MobiDBLite consensus disorder prediction 118 145 - -
Gso20g1617 254 CDD SANT 19 64 IPR001005 -
Gso20g1617 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Gso20g1617 254 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
Gso20g1617 254 SMART sant 69 117 IPR001005 -
Gso20g1617 254 SMART sant 16 66 IPR001005 -
Gso20g1617 254 Gene3D - 74 119 - -
Gso20g1617 254 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Gso20g1617 254 MobiDBLite consensus disorder prediction 118 134 - -
Gso20g1617 254 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Gso20g1617 254 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 247 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gso20g1617 254 Gene3D - 17 69 - -
Gso20g1617 254 PANTHER MYB TRANSCRIPTION FACTOR 1 247 - -
Gso20g1617 254 CDD SANT 74 115 IPR001005 -
Gso20g1617 254 Pfam Myb-like DNA-binding domain 70 114 IPR001005 -
Gso20g1617 254 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Gso20g1617 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 64 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1617 Gso-Chr20 46741464 46742926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1617 12 254 MYB Transcription Factor Family AT4G13480 52.490 7.68e-83 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso20g1617 Myb_DNA-binding 7.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1617 K09422 - gmx:100782089 503.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1617 20 46741464 46742926 Gso20g1617 20 46741464 46742926 ECH
Gso20g1617 20 46741464 46742926 Gso10g1724 10 43940956 43942473 GST