Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1614 ATGGAGCAGGAAGAGCACGAGGTGTACGGTGCAGACATTCCCGACGAGGAGATTGACATGGACGCAGACGCCGAACAGCAAGACGAGCAACTTGCCCCCAATCACACAAACAAGGAACTGGAGGACATGAAGAAGAGGCTGAAGGAGATCGAGGAGGAAGCTAGCGCCCTACGCGAAATGCAGGCAAAGGTTGAGAAAGAGATGGGCGCTGTTCAAGATTCGTCTGGCACTTCTGCGACTCAAGTTGAAAAGGAGGAAGTGGATGCTCGATCAATCTATGTTGGTAATGTTGACTATGCATGTACGCCTGAAGAAGTCCAGCAGCATTTTCAGTCCTGTGGAACTGTGAACAGGGTGACAATACTGACAGACAAATTTGGTCAACCAAAAGGGTTTGCTTATGTAGAGTTTGTTGAGATTGATGCTGTGCAGAATGCTCTCCTGTTAAATGAATCAGAATTACATGGTCGACAACTGAAGGTGTCTGCCAAGCGTACAAATGTTCCTGGAATGAAGCAGTATTTTGGAAGAAGACCTGCTGGTTTCCGATCTAGGAGGCCTTTCATGCCTGCTTCATTCTTTCCACCATATGGATATGGAAGGGTTCCAAGGTATAGAAGACCCACTCGATACAGGCCATACTAG 645 0.476 MEQEEHEVYGADIPDEEIDMDADAEQQDEQLAPNHTNKELEDMKKRLKEIEEEASALREMQAKVEKEMGAVQDSSGTSATQVEKEEVDARSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYFGRRPAGFRSRRPFMPASFFPPYGYGRVPRYRRPTRYRPY* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1614 214 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 160 IPR000504 GO:0003723
Gso20g1614 214 CDD RRM_II_PABPs 91 162 - -
Gso20g1614 214 Gene3D - 12 172 IPR012677 -
Gso20g1614 214 SMART rrm1_1 91 162 IPR000504 GO:0003723
Gso20g1614 214 Coils Coil 33 67 - -
Gso20g1614 214 MobiDBLite consensus disorder prediction 1 26 - -
Gso20g1614 214 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 166 IPR000504 GO:0003723
Gso20g1614 214 MobiDBLite consensus disorder prediction 1 44 - -
Gso20g1614 214 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 3 213 - -
Gso20g1614 214 PANTHER POLYADENYLATE-BINDING PROTEIN 1-LIKE 3 213 - -
Gso20g1614 214 SUPERFAMILY RNA-binding domain, RBD 80 187 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1614 Gso-Chr20 46716086 46722006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1614 91 162 Eukaryotic Initiation Factors Gene Family AT2G36660 38.158 4.62e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1614 K14396 - gmx:100527545 358.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1614 20 46716086 46722006 Gso10g1728 10 43962801 43967807 GST