Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1609 ATGTCGGATGCGCCACCGAGCCCGACTCATGAGAGTGGGGGCGAGCAGAGCCCGCGCGGTTCGTCGTCCGGCGCGAGGGAGCAGGACCGGTACCTCCCGATTGCCAACATCAGCCGCATTATGAAGAAGGCTCTGCCTCCCAACGGCAAGATTGCAAAGGATGCCAAAGACACCATGCAGGAATGCGTTTCTGAGTTCATCAGCTTCATTACCAGCGAGGCGAGTGAGAAATGCCAGAAGGAGAAGAGAAAGACAATCAATGGAGACGATTTGCTATGGGCCATGGCCACTTTAGGATTTGAAGACTACATAGAGCCGCTTAAGGTGTACCTGGCTAGGTACAGAGAGGCGGAGGGTGACACTAAAGGATCTGCTAGAAGTGGTGATGGATCTGCTACACCAGATCAAGTTGGCCTTGCAGGTCAAAATTCTCAGCTTGTTCATCAGGGTTCGCTGAACTATATTGGTTTGCAGGTGCAACCACAACATCTGGTTATGCCTTCAATGCAAAGCCATGAATAG 522 0.5211 MSDAPPSPTHESGGEQSPRGSSSGAREQDRYLPIANISRIMKKALPPNGKIAKDAKDTMQECVSEFISFITSEASEKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKVYLARYREAEGDTKGSARSGDGSATPDQVGLAGQNSQLVHQGSLNYIGLQVQPQHLVMPSMQSHE* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1609 173 MobiDBLite consensus disorder prediction 120 142 - -
Gso20g1609 173 MobiDBLite consensus disorder prediction 1 24 - -
Gso20g1609 173 MobiDBLite consensus disorder prediction 1 30 - -
Gso20g1609 173 Gene3D Histone, subunit A 18 152 IPR009072 GO:0046982
Gso20g1609 173 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 153 IPR027113 GO:0001228|GO:0006355|GO:0016602
Gso20g1609 173 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Gso20g1609 173 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Gso20g1609 173 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Gso20g1609 173 MobiDBLite consensus disorder prediction 126 142 - -
Gso20g1609 173 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Gso20g1609 173 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 1 153 - -
Gso20g1609 173 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Gso20g1609 173 SUPERFAMILY Histone-fold 28 145 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1609 Gso-Chr20 46657027 46661460 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1609 9 167 CCAAT-HAP3 Transcription Factor Family AT2G37060 72.500 4.32e-77 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gso20g1609 CBFD_NFYB_HMF 8.8e-29 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1609 K08065 - gmx:100779577 349.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1609 20 46657027 46661460 Gso10g1734 10 44008478 44012790 GST