Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1607 ATGGCAGAATCGCGCCCCCCTAAGCGCCCCAAAATCTCTAGGGGGGATGATGATTATATGCCGGGAAATATTCTTGAGATTGAGCTTTGTAATTTCATGACATTTGATTACTTAAAATGCAAACCTGGGCCTCGGTTGAATCTTGTAATTGGGCCCAATGGTTCTGGTAAAAGTTCGCTTGTATGTGCTATTGCTCTTGGCCTCTGTGGAGAGCCCCAGTTGCTTGGGCGTGCTACGAGTATTGGGGCATATGTGAAGCGGGGAGAAGAATCTGGCTACATTAAGATCACCTTGAGAGGGGACCATAAAGTGGAACACATTACCATTATGCGTAAAATTAATACTAATAACAAGTCTGAATGGTTGCTCAATGGAAATGTGGTGCCTAAAAAGGATGTGGCTGAAACCATTCAAAGGTTTAATATACAAGTCAATAATTTGACTCAATTTTTACCGCAAGACAGGGTCTGTGAGTTTGCAAAGTTAACTCCTGTTCAACTTCTGGAAGAGACCGAAAAGGCTGTTGGTGATCCACAGCTTCCAGAGCAACATCGAGCATTAGTTGATAAAAGTCGTGCATTGAAGCATATTGAGTTGTCTCTGGAGAAAAATGAAGGAACTTTAAAACAGTTGAAGGAACGGAATGCTGAATTAGAGACGGATGTTGAACGTGTTCGTCAAAGAGACGAACTTCTTGCCAAGGCTGAAGCAATGAAAAAGAAATTGCCATGGCTGAGGTATGATATGAAGCAGGCAGAATACCGGGAAGCTAAGGAGCGTGAGAATGATGCCGCAAAGGCATTGGAGGAAGCTGCAAAGTTATTAAATGATCTTAAAGAACCCATTATGAAACAAAAAGAAGAGAAGGCTGCATTATATGCAAAATGCAAAAAGGTTAGCAACCATGCAAGTGAGAATGCAAAGAAGCGAACCGAACTTATGGAGGAGGAGAACAAATTGGATGTAGAATTAAAAGGAAAATACAAAGAAATGGAAGAGTTGAGGAGGCAGGAAGAAACTCGACAACAAAAACTTGTAAAAGCTAGGGAGGAAGTTGCTATTGCTGAACTTGAACTTGAGAATCTACCCCTTTATGTACCTCCTAAGGATGAGCTTCAAAGACTAACGGCCAAAATTGCGGAATTGGATTATTCTGCTAAGCAAATGAGGCAGAAGAAGTCACAAGCAGAAAATGAAATAAACCATAAGAAGTCATCCATGAATCGGATTAAAGAAAGGTTGATTGAAATGAATAATAAAAGTACAAAGTGTTTGCATGCATTGCAAAGATCAGGGGCTGAAAAAATTTTTGAAGCTTATAAATGGGTCCAAGATCATCGGCATGAATTCAATAAGGAGGTTTACGGCCCAGTTTTATTAGAGGTGAATGTCTCAAATAAGGATCATGCTGCATATCTAGAGGGTCAAGTGGCTCATTACACTTGGAAGTCCTTCATAACACAAGATTCTGGTGATCGAGATCTTTTGGCGAAACACCTACGGTTCTTTGATGTAAATGTTCTAAATTATACTGGCGGTGATGGTCCCCAAAGAGAGCCTTTTGAAATTTCTGAAGATAAGCGTGCTCTTGGCATCTACTCCCGGCTGGATCAAATTTTTGATGCTCCTATTGCTGTGAAGGAGGTTTTGATTAGCCAGTTTAATCTAGATTATTCATATATTGGATCCGAAAAATCTGATCAGAATGCTGGTGAGGTCCGGAAATTGGGAATCCTAGATTTTTGGACACCTGAGAATCACTACCATTGGTCCAAGTCTAGATATGCAAATTATGAATCTGCAGTCGTTAATCAAGTGCAACGCCCACAACTTTTATTGAATAATTTGAATGTTGGTGAAATTGAGAAGCTGAGTTCCGAGCAAAGGGAGCTTGAAGAAATTGTTGCTAATTTGGAGGAAAGTGTTAAAAGGTTTCACGACGAAGAAAGAAGCTTACTGAATCAATCTGCTAATCTTCGTAAACAGTGGGAGGACATTAGTATTACAGTACAGAATGAGCAAAAGAAACGTCAAGCAATCATTAGCCGTATTGATCAAAAGAAAAAGTTCTTGAAACTGATGGAGGAACGGGATGATCTAGATACTGAGATAGCAAAGCTTGTTGATCAGGCTACAAAATATAACATTCGGCGTTTCCATAATGCAATGGAAATTAAGGATCTTCTTGTTGAAGCTGTGAGTTACAGACGGATTTTTATTGAACAACGTATGGCTTTCATTGAATTTGATGCAAAGATTGTAGAAATGGAGGCCAATCTGAAGCAGCATGAGAAATTTGCCCTGCAAGCATCATTGCACTTTGATAACTGTAAGAAAGAATCTGAGAATTGTAGACAGGATCTTACAGATTCCTTGAAGTATGCTAAATCAATTGCTCGGCTTACACCTGAGCTAAAGAAGGAATTTCTTGAGATGCCTACTACAATTGAGGACCTGGAAGCAGCTATCCAAGATACCACTTCTGAAGCCAATTCAATCCTTTTTGTCAATCATAACATATTGGAACAATATGAAGATCGCCAACAACAGATAGAAGATCTTGCAGCGAAACTGGAAGCAGACAAAAAGGAATCTACACGGTGTTTGGCTGAATTAAATAACATTAAGGGAAAATGGCTTCCAACATTGAGAAACCTTGTGGCAAAGATAAATGAAACTTTCAGTTTTAATTTCCAAGAGATGGCTGTTGCTGGAGAAGTTTCACTAGATGAACGTGATATGGACTTTGATCAATTTGGAATACTTATAAAAGTTAAATTCAGAGAAAACGGACAGCTTCAAAATCTCAGTGCTCACCATCAATCTGGCGGGGAACGCTCAGTTTCAACTATTGTTTATCTTGTTTCCCTTCAAGATCTTACAAACTGCCCATTTAGAGTCGTTGATGAGATCAACCAAGGGATGGACCCAATAAATGAAAGGAAGATGTTCCAGCAATTAGTGAGAGCAGCAAGCAAGCCAAATACGCCCCAGTGTTTCCTTCTTACCCCGAAATTGTTACCAGATCTGCAATATAGTGAGGCATGCAGTATATTGAATGTGATGAATGGCCCTTGGATTGAGCAACCCTCAAAGGTCTGGACTGCTGGTGATCGATGGAGTATCATCACGGGACTTGTTGGAGACACCCATTGTTAA 3159 0.3998 MAESRPPKRPKISRGDDDYMPGNILEIELCNFMTFDYLKCKPGPRLNLVIGPNGSGKSSLVCAIALGLCGEPQLLGRATSIGAYVKRGEESGYIKITLRGDHKVEHITIMRKINTNNKSEWLLNGNVVPKKDVAETIQRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPEQHRALVDKSRALKHIELSLEKNEGTLKQLKERNAELETDVERVRQRDELLAKAEAMKKKLPWLRYDMKQAEYREAKERENDAAKALEEAAKLLNDLKEPIMKQKEEKAALYAKCKKVSNHASENAKKRTELMEEENKLDVELKGKYKEMEELRRQEETRQQKLVKAREEVAIAELELENLPLYVPPKDELQRLTAKIAELDYSAKQMRQKKSQAENEINHKKSSMNRIKERLIEMNNKSTKCLHALQRSGAEKIFEAYKWVQDHRHEFNKEVYGPVLLEVNVSNKDHAAYLEGQVAHYTWKSFITQDSGDRDLLAKHLRFFDVNVLNYTGGDGPQREPFEISEDKRALGIYSRLDQIFDAPIAVKEVLISQFNLDYSYIGSEKSDQNAGEVRKLGILDFWTPENHYHWSKSRYANYESAVVNQVQRPQLLLNNLNVGEIEKLSSEQRELEEIVANLEESVKRFHDEERSLLNQSANLRKQWEDISITVQNEQKKRQAIISRIDQKKKFLKLMEERDDLDTEIAKLVDQATKYNIRRFHNAMEIKDLLVEAVSYRRIFIEQRMAFIEFDAKIVEMEANLKQHEKFALQASLHFDNCKKESENCRQDLTDSLKYAKSIARLTPELKKEFLEMPTTIEDLEAAIQDTTSEANSILFVNHNILEQYEDRQQQIEDLAAKLEADKKESTRCLAELNNIKGKWLPTLRNLVAKINETFSFNFQEMAVAGEVSLDERDMDFDQFGILIKVKFRENGQLQNLSAHHQSGGERSVSTIVYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASKPNTPQCFLLTPKLLPDLQYSEACSILNVMNGPWIEQPSKVWTAGDRWSIITGLVGDTHC* 1053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1607 1052 Coils Coil 317 351 - -
Gso20g1607 1052 Gene3D - 842 1022 IPR027417 -
Gso20g1607 1052 Gene3D - 23 228 IPR027417 -
Gso20g1607 1052 Coils Coil 372 413 - -
Gso20g1607 1052 CDD ABC_SMC5_euk 925 1027 - -
Gso20g1607 1052 Pfam RecF/RecN/SMC N terminal domain 25 993 IPR003395 -
Gso20g1607 1052 Coils Coil 194 228 - -
Gso20g1607 1052 Coils Coil 837 875 - -
Gso20g1607 1052 Coils Coil 251 278 - -
Gso20g1607 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 289 IPR027417 -
Gso20g1607 1052 CDD ABC_SMC5_euk 22 179 - -
Gso20g1607 1052 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 18 1048 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Gso20g1607 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 785 1003 IPR027417 -
Gso20g1607 1052 Coils Coil 621 655 - -
Gso20g1607 1052 Coils Coil 690 710 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1607 Gso-Chr20 46628298 46647277 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1607 1 1041 Structural Maintenance of Chromosomes family AT5G15920 61.864 0.0 1290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1607 K22803 - gmx:100778678 2065.43