Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1602 ATGAGCAATGAGGATCACGGTGTTTCAGGCAAGCAATATATAGATGCGGTGAGTGTTGGTTTAAGTGACAGAATCCCTTCTGATGATGATGCAGACTATATATGTCTACAGACGGGTGAAGAATTTTCTGCCGAGTTCTTACGTGATCGGGTTGCCTCAAGGAAATTTCCTGTCATTACTGATGCAGACCAGCATCTGCCAAACAGGTTGGATGCTAATATTAGAGAAAATAGTCATCAACTGGTTTATGAGGATCTAAAGCATGTTCTTGGGCTAAGGAGAACAGAATCTGATAGTAACTCAGATTTGTTGGAGATTGCTTCAGTCAGAGGATATGTTGATGAAGTTGACGGCAGGGCTTATCCTAATAATTTGAACAGATACCAGTGTGAACACAGCGGTTTCAGACAAGCATCAGGTACATTTTCTAGACAACTGTCAGGTAAATTTTCTGAGGGAAATGGTTGTGATCAAGTTAATTCAGGACCCAATGCTCCATCTGTTTACGTCGTTGAGTCTCCTCATTCATGCCATCCTTATGGATCAGTATTCTCAGAAGGTTCTTTCTATAAGAAGATAAAGTTTCTGTGTAGCTTTGGAGGTAGAATACTACCAAGACCAAATGACGGGAAGCTCAGGTATGTGGGTGGAGAGACACGGATAATATCAATCAGGAAGAACATAAAATGGGAGGAACTTATGAGGAAGACTTCTGCTATTTGCAGTCAAACTCACATTATCAAGTACCAGCTTCCTGGAGAAGATCTTGATGCTCTTATATCTGTTTGTTCCAATGAGGATCTTCATCATATGATCGAGGAATATGAAGAGCTTGAAAGAGCTGGAGGCTCTCAATGGCTGAGGATTTTTCTCATACCTTCAAATGAATGTGAGAGTCCAAGTTCAAATGAAGCAAGAGTCAATCAGCCAAGTGATGCAGATTATCATTATGTTGTTGCTGTTAATGGTATGCTGAATCCAAGTCCACAAAAGAATTCCAATGGGCTGAGTTTGGCAAACCATACTAGTCAGTTTGGAAATACCACTGATTACAACAGTCCACATTTCTATAGAGACTCATCCACATCTGCATTTGCTTCAGAGATGAAGGATTGCACCCCAACTTCTCCAAATTTGGTAGGCATACTCTCAAAACCTGGTTCTCAATATTTTACAGCCTTAGCAGGCAAGTCAGTCAATCAAATGTCTCCTTTATCTCCCGCTTGTGTACAGCCTACAGATCCCAAAATTTCTAATGTACAGATATTTAAGGATAAACCATATAATGCTATCAATGAAAGCATCACTCCCTTTGTTACGGAAAAAGTTCCATGCAACAATTCTTTGTATGTAGACAATACCAATTATATTGATCCAGTTGCATACCATAATAACCAATATATAGTGAAATCTGACCTGATTAGGAAACCTGGCAAGAATCTTCATCTTCACAGACGGAACAACAGCAGTAATGAGTTTGTCTCTTCTACGGCATGTAGTCTAACTGACTTGATTTTCGAGAGACCTTTAGTCACCAATGAAGGTTCATATCATTTTAACAAGGTTGTCTCTCGTCCTCATGAGTCGTCGAGTTTATTCTCAGAGTCTGATGTTAGAGAGGGGTCTCGGAACAGAATGTTGCATGCACATTCTGACTCAACACTTAAGGAGAATGATGAGAACTATAAAGTTCACTTGCAATTTCCCCTTAGCGTAGAGAGAGACAATTTTCCATCATTGAAAAATTCATGTTCTTTAGAAGAATGTTCAATACAGCCTGGAAAGACAATTGATAGGAAAGAACACTCAGCAAAGTATCAAAATTTGCCCATTTTTGGAATGACGGATAGTTTTAATGTGTCAGAAAAGGGTAAAGAGATCTTGCAACATGCAGATAACAGCAATGATTTCTTTAATGAAAATGTTGGAGCTATGTCACAAGACAATTCCATAGATTTAAAACATTTACAGTACATTTACACCCCACATGGTGTTTGCTCATCTTCACCAGATTTCCAAAGCAGTGAATGCAATTTATCTACTGCATCATCTATCTCTTTGGAATCCACAAGAAACCTGAGGGGGCAACCACATGGTCTATCATTAGACAGAACTGCTTCTGAGTTTTCCACGAGGAGCCAAAATTCATCAATGCATCACCAATATGCTATGCCGGAGACAAAAGACGGTCAACCACTTTTTCCTGGCTCTTTTGAGTCCCAAACTGAGAGAGGGTCTATACTACCTATCTCATATATGGACATGGGTTCTTCCCTAAGAGAGGTTGTTATCCCTGTTGAAGATCCTGCATACAACCTGCACCAAAAGGAACAAAACACAGTCATTAAGAATCAGTGTTCTGAATATATCAATGAATTCTGTGTCAACAAGCCTGTGCCAGAATCAGTGGCTGTTGTCAAGGGAGCAATGGATTATATTTCTTCAGGTATCCAGTCATGCCTAAAAGATGTCTCAAATGTAGATGAAGAGGCTGAAGTTGAACCTACATCTCCTGAAAAGGAAGGGATAGAATGTGATAATCCAGAATCTGAAAGTAAGCATGCAGAATCTGATAGTGGAAACGTCAACAAACCTATGGGTGATAGAGCAACTGCTGAAACAGAGGCTGAAGTTTATGGTTTACAGAATATTGAGAATGCTGATCTTGAAGAATTGCAAGAGTTAGGATCTGGAACATTTGGAACTGTTTATCATGGAAAGTGGAGGGGAACAGATGTTGCAATTAAGAGAATAAAAAGTAGTTGTTTCTCTGGTAGATTGTCAGAGCAAGAGCGGTTGACTAAAGATTTTTGGAGAGAGGCACAGATTCTGTCAACTCTTCACCATCCAAATGTGGTAGCATTTTATGGGGTAGTTCCAGATGGCCCAGGTGGAACATTGGCAACAGTAACCGAATACATGGTGCATGGATCACTGAGGAATGTTCTCACGAAGAAGGATAGGCATGCAATTTATCACTCTTACTTTTCTGCCGAGTTCTTACGTGATCGGGTTGCCTCAAGGAAATTTCCTGTCATTACTGATGCAGACCAGCATCTGCCAAACAGGTTGGATGCTAATATTAGAGAAAATAGTCATCAACTGGTTTATGAGGATCTAAAGCATGTTCTTGGGCTAAGGAGAACAGAATCTGATAGTAACTCAGATTTGTTGGAGATTGCTTCAGTCAGAGGATATGTTGATGAAGTTGACGGCAGGGCTTATCCTAATAATTTGAACAGATACCAGTGTGAACACAGCGGTTTCAGACAAGCATCAGGTACATTTTCTAGACAACTGTCAGGTAAATTTTCTGAGGGAAATGGTTGTGATCAAGTTAATTCAGGACCCAATGCTCCATCTGTTTACGTCGTTGAGTCTCCTCATTCATGCCATCCTTATGGATCAGTATTCTCAGAAGGTTCTTTCTATAAGAAGATAAAGTTTCTGTGTAGCTTTGGAGGTAGAATACTACCAAGACCAAATGACGGGAAGCTCAGGTATGTGGGTGGAGAGACACGGATAATATCAATCAGGAAGAACATAAAATGGGAGGAACTTATGAGGAAGACTTCTGCTATTTGCAGTCAAACTCACATTATCAAGTACCAGCTTCCTGGAGAAGATCTTGATGCTCTTATATCTGTTTGTTCCAATGAGGATCTTCATCATATGATCGAGGAATATGAAGAGCTTGAAAGAGCTGGAGGCTCTCAATGGCTGAGGATTTTTCTCATACCTTCAAATGAATGTGAGAGTCCAAGTTCAAATGAAGCAAGAGTCAATCAGCCAAGTGATGCAGATTATCATTATGTTGTTGCTGTTAATGGTATGCTGAATCCAAGTCCACAAAAGAATTCCAATGGGCTGAGTTTGGCAAACCATACTAGTCAGTTTGGAAATACCACTGATTACAACAGTCCACATTTCTATAGAGACTCATCCACATCTGCATTTGCTTCAGAGATGAAGGATTGCACCCCAACTTCTCCAAATTTGGTAGGCATACTCTCAAAACCTGGTTCTCAATATTTTACAGCCTTAGCAGGCAAGTCAGTCAATCAAATGTCTCCTTTATCTCCCGCTTGTGTACAGCCTACAGATCCCAAAATTTCTAATGTACAGATATTTAAGGATAAACCATATAATGCTATCAATGAAAGCATCACTCCCTTTGTTACGGAAAAAGTTCCATGCAACAATTCTTTGTATGTAGACAATACCAATTATATTGATCCAGTTGCATACCATAATAACCAATATATAGTGAAATCTGACCTGATTAGGAAACCTGGCAAGAATCTTCATCTTCACAGACGGAACAACAGCAGTAATGAGTTTGTCTCTTCTACGGCATGTAGTCTAACTGACTTGATTTTCGAGAGACCTTTAGTCACCAATGAAGGTTCATATCATTTTAACAAGGTTGTCTCTCGTCCTCATGAGTCGTCGAGTTTATTCTCAGAGTCTGATGTTAGAGAGGGGTCTCGGAACAGAATGTTGCATGCACATTCTGACTCAACACTTAAGGAGAATGATGAGAACTATAAAGTTCACTTGCAATTTCCCCTTAGCGTAGAGAGAGACAATTTTCCATCATTGAAAAATTCATGTTCTTTAGAAGAATGTTCAATACAGCCTGGAAAGACAATTGATAGGAAAGAACACTCAGCAAAGTATCAAAATTTGCCCATTTTTGGAATGACGGATAGTTTTAATGTGTCAGAAAAGGGTAAAGAGATCTTGCAACATGCAGATAACAGCAATGATTTCTTTAATGAAAATGTTGGAGCTATGTCACAAGACAATTCCATAGATTTAAAACATTTACAGTACATTTACACCCCACATGGTGTTTGCTCATCTTCACCAGATTTCCAAAGCAGTGAATGCAATTTATCTACTGCATCATCTATCTCTTTGGAATCCACAAGAAACCTGAGGGGGCAACCACATGGTCTATCATTAGACAGAACTGCTTCTGAGTTTTCCACGAGGAGCCAAAATTCATCAATGCATCACCAATATGCTATGCCGGAGACAAAAGACGGTCAACCACTTTTTCCTGGCTCTTTTGAGTCCCAAACTGAGAGAGGGTCTATACTACCTATCTCATATATGGACATGGGTTCTTCCCTAAGAGAGGTTGTTATCCCTGTTGAAGATCCTGCATACAACCTGCACCAAAAGGAACAAAACACAGTCATTAAGAATCAGTGTTCTGAATATATCAATGAATTCTGTGTCAACAAGCCTGTGCCAGAATCAGTGGCTGTTGTCAAGGGAGCAATGGATTATATTTCTTCAGGTATCCAGTCATGCCTAAAAGATGTCTCAAATGTAGATGAAGAGGCTGAAGTTGAACCTACATCTCCTGAAAAGGAAGGGATAGAATGTGATAATCCAGAATCTGAAAGTAAGCATGCAGAATCTGATAGTGGAAACGTCAACAAACCTATGGGTGATAGAGCAACTGCTGAAACAGAGGCTGAAGTTTATGGTTTACAGAATATTGAGAATGCTGATCTTGAAGAATTGCAAGAGTTAGGATCTGGAACATTTGGAACTGTTTATCATGGAAAGTGGAGGGGAACAGATGTTGCAATTAAGAGAATAAAAAGTAGTTGTTTCTCTGGTAGATTGTCAGAGCAAGAGCGGTTGACTAAAGATTTTTGGAGAGAGGCACAGATTCTGTCAACTCTTCACCATCCAAATGTGGTAGCATTTTATGGGGTAGTTCCAGATGGCCCAGGTGGAACATTGGCAACAGTAACCGAATACATGGTGCATGGATCACTGAGGAATGTTCTCACGAAGAAGGATAGAGTGCTTGACCGTCGTAAAAGGCTCCTGATTGCAATGGATGCAGCCTTTGGGATGGAATATTTGCATTTGAAAAATATTGTTCATTTTGATTTGAAGTGTGATAATTTACTTGTCAATCTGGGCGATCTTGAACGACCTGTATGTAAGGTTGGAGATTTTGGCCTATCCCGAATTAAACGCAACACACTTGTTTCCGGTGGTGTTAGAGGAACCCTTCCATGGATGGCACCTGAGTTACTGGATGGTAACAGTTGTAGGGTATCTGAGAAGGTTGATATTTTCTCATTTGGCATTGCAATGTGGGAAATCTTGACCGGGGAAGAACCATATTCTAACATGCACTGTGGCGCTATCATAGGTGGTATTGTCAATAATACGCTCAGGCCTCCGATTCCAAAACGATGCGATTCCGAGTGGAAAAAGCTGATGGAAGAATGCTGGAGTCCCGATCCTGCAGCCAGGCCAACCTTCACAGAAATTACAAACAGGCTTCGCAGCATGTCAGATTCACTGCCCAAAAAGAGACATAACATTGTAAAACGATGA 6372 0.4016 MSNEDHGVSGKQYIDAVSVGLSDRIPSDDDADYICLQTGEEFSAEFLRDRVASRKFPVITDADQHLPNRLDANIRENSHQLVYEDLKHVLGLRRTESDSNSDLLEIASVRGYVDEVDGRAYPNNLNRYQCEHSGFRQASGTFSRQLSGKFSEGNGCDQVNSGPNAPSVYVVESPHSCHPYGSVFSEGSFYKKIKFLCSFGGRILPRPNDGKLRYVGGETRIISIRKNIKWEELMRKTSAICSQTHIIKYQLPGEDLDALISVCSNEDLHHMIEEYEELERAGGSQWLRIFLIPSNECESPSSNEARVNQPSDADYHYVVAVNGMLNPSPQKNSNGLSLANHTSQFGNTTDYNSPHFYRDSSTSAFASEMKDCTPTSPNLVGILSKPGSQYFTALAGKSVNQMSPLSPACVQPTDPKISNVQIFKDKPYNAINESITPFVTEKVPCNNSLYVDNTNYIDPVAYHNNQYIVKSDLIRKPGKNLHLHRRNNSSNEFVSSTACSLTDLIFERPLVTNEGSYHFNKVVSRPHESSSLFSESDVREGSRNRMLHAHSDSTLKENDENYKVHLQFPLSVERDNFPSLKNSCSLEECSIQPGKTIDRKEHSAKYQNLPIFGMTDSFNVSEKGKEILQHADNSNDFFNENVGAMSQDNSIDLKHLQYIYTPHGVCSSSPDFQSSECNLSTASSISLESTRNLRGQPHGLSLDRTASEFSTRSQNSSMHHQYAMPETKDGQPLFPGSFESQTERGSILPISYMDMGSSLREVVIPVEDPAYNLHQKEQNTVIKNQCSEYINEFCVNKPVPESVAVVKGAMDYISSGIQSCLKDVSNVDEEAEVEPTSPEKEGIECDNPESESKHAESDSGNVNKPMGDRATAETEAEVYGLQNIENADLEELQELGSGTFGTVYHGKWRGTDVAIKRIKSSCFSGRLSEQERLTKDFWREAQILSTLHHPNVVAFYGVVPDGPGGTLATVTEYMVHGSLRNVLTKKDRHAIYHSYFSAEFLRDRVASRKFPVITDADQHLPNRLDANIRENSHQLVYEDLKHVLGLRRTESDSNSDLLEIASVRGYVDEVDGRAYPNNLNRYQCEHSGFRQASGTFSRQLSGKFSEGNGCDQVNSGPNAPSVYVVESPHSCHPYGSVFSEGSFYKKIKFLCSFGGRILPRPNDGKLRYVGGETRIISIRKNIKWEELMRKTSAICSQTHIIKYQLPGEDLDALISVCSNEDLHHMIEEYEELERAGGSQWLRIFLIPSNECESPSSNEARVNQPSDADYHYVVAVNGMLNPSPQKNSNGLSLANHTSQFGNTTDYNSPHFYRDSSTSAFASEMKDCTPTSPNLVGILSKPGSQYFTALAGKSVNQMSPLSPACVQPTDPKISNVQIFKDKPYNAINESITPFVTEKVPCNNSLYVDNTNYIDPVAYHNNQYIVKSDLIRKPGKNLHLHRRNNSSNEFVSSTACSLTDLIFERPLVTNEGSYHFNKVVSRPHESSSLFSESDVREGSRNRMLHAHSDSTLKENDENYKVHLQFPLSVERDNFPSLKNSCSLEECSIQPGKTIDRKEHSAKYQNLPIFGMTDSFNVSEKGKEILQHADNSNDFFNENVGAMSQDNSIDLKHLQYIYTPHGVCSSSPDFQSSECNLSTASSISLESTRNLRGQPHGLSLDRTASEFSTRSQNSSMHHQYAMPETKDGQPLFPGSFESQTERGSILPISYMDMGSSLREVVIPVEDPAYNLHQKEQNTVIKNQCSEYINEFCVNKPVPESVAVVKGAMDYISSGIQSCLKDVSNVDEEAEVEPTSPEKEGIECDNPESESKHAESDSGNVNKPMGDRATAETEAEVYGLQNIENADLEELQELGSGTFGTVYHGKWRGTDVAIKRIKSSCFSGRLSEQERLTKDFWREAQILSTLHHPNVVAFYGVVPDGPGGTLATVTEYMVHGSLRNVLTKKDRVLDRRKRLLIAMDAAFGMEYLHLKNIVHFDLKCDNLLVNLGDLERPVCKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLDGNSCRVSEKVDIFSFGIAMWEILTGEEPYSNMHCGAIIGGIVNNTLRPPIPKRCDSEWKKLMEECWSPDPAARPTFTEITNRLRSMSDSLPKKRHNIVKR* 2124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1602 2123 PANTHER SERINE-THREONINE PROTEIN KINASE 1070 2120 - -
Gso20g1602 2123 PANTHER SERINE-THREONINE PROTEIN KINASE 796 988 - -
Gso20g1602 2123 PANTHER SERINE-THREONINE PROTEIN KINASE 109 696 - -
Gso20g1602 2123 SMART PB1_new 207 294 IPR000270 GO:0005515
Gso20g1602 2123 SMART PB1_new 1161 1248 IPR000270 GO:0005515
Gso20g1602 2123 Pfam PB1 domain 208 291 IPR000270 GO:0005515
Gso20g1602 2123 Pfam PB1 domain 1162 1245 IPR000270 GO:0005515
Gso20g1602 2123 MobiDBLite consensus disorder prediction 836 858 - -
Gso20g1602 2123 MobiDBLite consensus disorder prediction 1790 1812 - -
Gso20g1602 2123 Gene3D - 211 294 - -
Gso20g1602 2123 Gene3D - 1165 1248 - -
Gso20g1602 2123 MobiDBLite consensus disorder prediction 1660 1694 - -
Gso20g1602 2123 MobiDBLite consensus disorder prediction 825 870 - -
Gso20g1602 2123 SUPERFAMILY Protein kinase-like (PK-like) 1837 2105 IPR011009 -
Gso20g1602 2123 SUPERFAMILY CAD & PB1 domains 1162 1255 - -
Gso20g1602 2123 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 1070 2120 - -
Gso20g1602 2123 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 109 696 - -
Gso20g1602 2123 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 796 988 - -
Gso20g1602 2123 Pfam Protein tyrosine and serine/threonine kinase 891 990 IPR001245 GO:0004672|GO:0006468
Gso20g1602 2123 Pfam Protein tyrosine and serine/threonine kinase 1845 2106 IPR001245 GO:0004672|GO:0006468
Gso20g1602 2123 Gene3D Transferase(Phosphotransferase) domain 1 1931 2122 - -
Gso20g1602 2123 ProSiteProfiles Protein kinase domain profile. 1843 2121 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1602 2123 CDD PB1_UP2 1150 1246 - -
Gso20g1602 2123 ProSiteProfiles Protein kinase domain profile. 889 1241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1602 2123 PRINTS Tyrosine kinase catalytic domain signature 1925 1938 IPR001245 GO:0004672|GO:0006468
Gso20g1602 2123 PRINTS Tyrosine kinase catalytic domain signature 1962 1980 IPR001245 GO:0004672|GO:0006468
Gso20g1602 2123 PRINTS Tyrosine kinase catalytic domain signature 2033 2055 IPR001245 GO:0004672|GO:0006468
Gso20g1602 2123 PRINTS Tyrosine kinase catalytic domain signature 2077 2099 IPR001245 GO:0004672|GO:0006468
Gso20g1602 2123 MobiDBLite consensus disorder prediction 1660 1676 - -
Gso20g1602 2123 MobiDBLite consensus disorder prediction 706 722 - -
Gso20g1602 2123 SUPERFAMILY Protein kinase-like (PK-like) 883 987 IPR011009 -
Gso20g1602 2123 CDD PB1_UP2 196 292 - -
Gso20g1602 2123 SMART serkin_6 1843 2110 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1602 2123 Gene3D Phosphorylase Kinase; domain 1 1836 1930 - -
Gso20g1602 2123 Gene3D Phosphorylase Kinase; domain 1 882 977 - -
Gso20g1602 2123 CDD STKc_MAP3K-like 1849 2106 - -
Gso20g1602 2123 ProSitePatterns Protein kinases ATP-binding region signature. 1849 1870 IPR017441 GO:0005524
Gso20g1602 2123 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1968 1980 IPR008271 GO:0004672|GO:0006468
Gso20g1602 2123 ProSitePatterns Protein kinases ATP-binding region signature. 895 916 IPR017441 GO:0005524
Gso20g1602 2123 SUPERFAMILY CAD & PB1 domains 208 301 - -
Gso20g1602 2123 MobiDBLite consensus disorder prediction 706 740 - -
Gso20g1602 2123 MobiDBLite consensus disorder prediction 1779 1824 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1602 Gso-Chr20 46576144 46587147 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1602 880 989 MAP Kinase Kinase Kinase AT1G16270 82.727 8.52e-51 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Gso20g1602 PK_Tyr_Ser-Thr 5.4e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1602 - - gsj:114402170 4302.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1602 20 46576144 46587147 Gso10g1740 10 44060148 44067480 GST