Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1597 ATGAAGGATACATTTCCCAAGAAGGAAATCTTCACACAAAAAACATTTCCAACTTGTTTGCAAGAAATGGCAACAGGATCAAAGTTTTTGGACAATGCAATTATAAGAGGTTCTCATTCTCTCACTGCCTCCAACCATGTTCCTGTATTAAGAGGTGGGGTAAACTCATCAATAGCATCACCTCATGAAAAGCTTCTTTTATGTTCAAATTCTGTTTCCATGAAAGAGGAGGCACCTTTAGCCACTTGGATTAGTCATATCCCTGCAAAATTCAATGGCCATGAAGACATCAAGAATGGCAAAGAGAAAAACCAATCCAATTCTATCTTCCCAGTCTCAGACATAAAAAACAGTTCCATTCCTCTAAATCTTTTGGAAACTCTCCCACCATTAACCATAGCGCCATGTTTTGATGATCCAGTGGCTTCCCTAGCATCTTCTTCTGCCAGACCAAAATTTCCAAACTTGACTTTGTTTTTGCCGGAACCCTCCATGGTGTACTCATCAATATCATCCTCAAATATAAAAGGTGGTGAAGTCATGTCAGCTACTTCAGACCCCTCATATCATGTGTCTCAGTTTGGCCAAAACCAGCATCAAGCAGGTAGTGGGGATGCACACAAAATGAACAACAACCTAACAAATTCGCGGTCCAAGTCTTTCAACGAGAATTGGTTGAGTGCCACTAGGACTCAGCCTTTGAAGTATGGTGGAAGAGGCAAGCTGTTTAAAGGTGTGAGGCAGAGACACTGGGGGAAATGGGTAGCTGAGATTAGATTACCAAGAAACAGGACAAGGGTTTGGCTAGGGACTTTCGACTCCGCCGAAGATGCTGCCATCGCATATGACACAGCAGCATACATACTAAGAGGAGAATATGCTCAGTTGAACTTCCCAGATCTCAAGCATGTAATTCAGGCAAATTCTCTGAATGGAACCACTGCTGCACTTGTGGAGGCAAAACTACAAGCAATATCACAAGGTGGTTCTTCTCATAGGAAGCCAACTAATTCACCGCCAGGGTCAAGCAATAAGCACAATGATGAGAATGGAAAATTGAAAAGTATAAGTGGCAAAGATTCATCCATAAGGGTTGGAGCTGAGGTAACTGAGAGAAGCAAAAGCAAACACCATGAGACATCAGATGTGGAAGGTGTTCAGTTAAGTAGAATGCCCTCCTTAGACATGGACATCATTTGGGATGAACTTTTTATCTCTAATTCATGA 1227 0.4197 MKDTFPKKEIFTQKTFPTCLQEMATGSKFLDNAIIRGSHSLTASNHVPVLRGGVNSSIASPHEKLLLCSNSVSMKEEAPLATWISHIPAKFNGHEDIKNGKEKNQSNSIFPVSDIKNSSIPLNLLETLPPLTIAPCFDDPVASLASSSARPKFPNLTLFLPEPSMVYSSISSSNIKGGEVMSATSDPSYHVSQFGQNQHQAGSGDAHKMNNNLTNSRSKSFNENWLSATRTQPLKYGGRGKLFKGVRQRHWGKWVAEIRLPRNRTRVWLGTFDSAEDAAIAYDTAAYILRGEYAQLNFPDLKHVIQANSLNGTTAALVEAKLQAISQGGSSHRKPTNSPPGSSNKHNDENGKLKSISGKDSSIRVGAEVTERSKSKHHETSDVEGVQLSRMPSLDMDIIWDELFISNS* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1597 408 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF062 10 407 - -
Gso20g1597 408 SMART rav1_2 242 305 IPR001471 GO:0003700|GO:0006355
Gso20g1597 408 Pfam AP2 domain 243 291 IPR001471 GO:0003700|GO:0006355
Gso20g1597 408 MobiDBLite consensus disorder prediction 365 384 - -
Gso20g1597 408 MobiDBLite consensus disorder prediction 325 346 - -
Gso20g1597 408 SUPERFAMILY DNA-binding domain 242 300 IPR016177 GO:0003677
Gso20g1597 408 ProSiteProfiles AP2/ERF domain profile. 242 299 IPR001471 GO:0003700|GO:0006355
Gso20g1597 408 MobiDBLite consensus disorder prediction 325 387 - -
Gso20g1597 408 CDD AP2 241 301 IPR001471 GO:0003700|GO:0006355
Gso20g1597 408 Gene3D AP2/ERF domain 242 300 IPR036955 GO:0003700|GO:0006355
Gso20g1597 408 PRINTS Ethylene responsive element binding protein signature 243 254 IPR001471 GO:0003700|GO:0006355
Gso20g1597 408 PRINTS Ethylene responsive element binding protein signature 265 281 IPR001471 GO:0003700|GO:0006355
Gso20g1597 408 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 10 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1597 Gso-Chr20 46522898 46524560 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1597 118 408 AP2-EREBP Transcription Factor Family AT4G13620 43.813 4.74e-67 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso20g1597 AP2 4.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1597 - - gmx:100820013 786.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1597 20 46522898 46524560 Gso10g1747 10 44117421 44119179 GST