Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1592 ATGAACGGTGTCGGTGTAGCTGAGCAATGGAGCGACGTGCCGTTTAGGATGGACGACGCGGACGACATGATCATCTTCAACTCCCTCTGCGACGCCGTTTCACACGGTTGGTCTTTGTCCGATTCCACCACACCAAAACCAGAAAACGACGCCGCGGATCAGAGACCAGCTCACGAAATAAGTTACTCCGATTGCCAGAACGACGATTCCAAAGCTGCCGTTTTGGCGCAGAAGAAGAACATGGGAACGTGCTACAGAGGAGTGAGGCAAAGACCATGGGGAAAGTTCACGGCCGAGATTCGCGACCCGGCTCGGAACGGCGCGAGGGCGTGGCTTGGCACTTATCAAACGGCTGAGGATGCGGCTTTGGCTTATGATCGAGCCGCGTTCAAGCTACGCGGCTCGAAGGCTTTGCTGAACTTTCCGCACCGAATAAACTTCAACGAGCCGCCGCCGGTGAGAGTCACGGCCAAGAAACGGAAAGTTCCGGCTTCGGTGAAGCTGAGTCGAAGTTGA 516 0.5581 MNGVGVAEQWSDVPFRMDDADDMIIFNSLCDAVSHGWSLSDSTTPKPENDAADQRPAHEISYSDCQNDDSKAAVLAQKKNMGTCYRGVRQRPWGKFTAEIRDPARNGARAWLGTYQTAEDAALAYDRAAFKLRGSKALLNFPHRINFNEPPPVRVTAKKRKVPASVKLSRS* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1592 171 Pfam AP2 domain 83 134 IPR001471 GO:0003700|GO:0006355
Gso20g1592 171 SMART rav1_2 84 148 IPR001471 GO:0003700|GO:0006355
Gso20g1592 171 PANTHER BNAANNG21280D PROTEIN 7 159 - -
Gso20g1592 171 PRINTS Ethylene responsive element binding protein signature 85 96 IPR001471 GO:0003700|GO:0006355
Gso20g1592 171 PRINTS Ethylene responsive element binding protein signature 124 144 IPR001471 GO:0003700|GO:0006355
Gso20g1592 171 Gene3D AP2/ERF domain 84 145 IPR036955 GO:0003700|GO:0006355
Gso20g1592 171 PANTHER DNA-BINDING DOMAIN 7 159 IPR044808 GO:0003700|GO:0009873
Gso20g1592 171 SUPERFAMILY DNA-binding domain 84 144 IPR016177 GO:0003677
Gso20g1592 171 CDD AP2 85 143 IPR001471 GO:0003700|GO:0006355
Gso20g1592 171 ProSiteProfiles AP2/ERF domain profile. 84 142 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1592 Gso-Chr20 46492742 46493531 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1592 1 166 AP2-EREBP Transcription Factor Family AT2G44840 50.000 6.36e-48 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso20g1592 AP2 7.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1592 K09286 K13432 gmx:102664672 347.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1592 20 46492742 46493531 Gso20g1592 20 46492742 46493531 ECH