Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1589 ATGGCCACAGCAGAAGAAATTTCAACTTTGAAACTGTTGCGCCAATATCTCTTGGGGGATATTTCAGACCCTTTTCTCACCAATCTCATTCCAGTAAAACTTGAAGACCCCTCATCAGGACTTGATATGGGTTCAAACTTCTCAGAACAAAGCAGCTTCTGCAAGTTTCTGGAGTGCTTTGATTTTGAAGCAGAAGTGGTAGGTCTCACTTCTCATCATAAGGTCCAAAGCTCCATTGCAACAAGTCCACCCCAGAATTTCAATTTGCCAGAAGAACCAATGGTGTCAATGAAAAAGGAAGCAACATGTTATGCAACAAGGCATTACAGAGGAGTGAGGAGAAGGCCATGGGGGAAGTTTGCGGCAGAGATTCGCGACCCCAAAAAGAAAGGGAGCAGGGTGTGGCTTGGCACATTTGACACTGAGATTGATGCTGCTAAGGCTTATGATTGTGCTGCCTTCAGAATGAGGGGTCATAAAGCCGTGTTGAATTTCCCTCTAGAGGCTGGAATGTCTCATCCAGAGCCCAACAGCAGTGGCAGGAAAAGGAGAAGAGAGTACACAACAGCTGCCACAAGTTCAAGGCATGTTATGTCATGA 600 0.4567 MATAEEISTLKLLRQYLLGDISDPFLTNLIPVKLEDPSSGLDMGSNFSEQSSFCKFLECFDFEAEVVGLTSHHKVQSSIATSPPQNFNLPEEPMVSMKKEATCYATRHYRGVRRRPWGKFAAEIRDPKKKGSRVWLGTFDTEIDAAKAYDCAAFRMRGHKAVLNFPLEAGMSHPEPNSSGRKRRREYTTAATSSRHVMS* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1589 199 PRINTS Ethylene responsive element binding protein signature 109 120 IPR001471 GO:0003700|GO:0006355
Gso20g1589 199 PRINTS Ethylene responsive element binding protein signature 148 168 IPR001471 GO:0003700|GO:0006355
Gso20g1589 199 SUPERFAMILY DNA-binding domain 108 168 IPR016177 GO:0003677
Gso20g1589 199 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 187 - -
Gso20g1589 199 MobiDBLite consensus disorder prediction 168 199 - -
Gso20g1589 199 CDD AP2 108 166 IPR001471 GO:0003700|GO:0006355
Gso20g1589 199 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 5 187 - -
Gso20g1589 199 SMART rav1_2 108 172 IPR001471 GO:0003700|GO:0006355
Gso20g1589 199 Pfam AP2 domain 108 159 IPR001471 GO:0003700|GO:0006355
Gso20g1589 199 ProSiteProfiles AP2/ERF domain profile. 108 166 IPR001471 GO:0003700|GO:0006355
Gso20g1589 199 Gene3D AP2/ERF domain 107 168 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1589 Gso-Chr20 46468643 46470115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1589 106 185 AP2-EREBP Transcription Factor Family AT5G07580 75.000 7.47e-41 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso20g1589 AP2 4.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1589 - - gmx:100306125 405.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1589 20 46468643 46470115 Gso20g1589 20 46468643 46470115 ECH
Gso20g1589 20 46468643 46470115 Gso10g1753 10 44185983 44187085 GST