LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso20g1578	ATGAATAGTTCAGAGGAGACTGTGTTATTGCTTGTGAGCTTTATTGTTCTAACCCTTATAGTTACACTCACAGCTTATGTGTGCTCTAATAACATTCCACGCACTATTCCATCTGTGCCTGGTGGTGCCACACACTCCAACAACAACCACACCACAATCACTGTGGAGCCACCTGAGCCACGCTTAGATCACACTAGTGTCAGAAGCTATCCTAGTCTCCAATTCTCCAAGGCCAAATTGTGTAGTAGCAATAGTAATAGTAGCTCTTCAAGTTGTTCCATATGCTTGATGGATTACAAAGAGTGTGATTCCTTGAGAGTGCTTCCTGCTTGTGCTCACTTCTTCCATGTCAAGTGTGTTGATCCTTGGTTGAGAATCAATTTGACATGCCCGGTTTGTAGGACCCCAATAGCCCTCCCAGATATATGTAAAAATTTGTAA	441	0.4286	MNSSEETVLLLVSFIVLTLIVTLTAYVCSNNIPRTIPSVPGGATHSNNNHTTITVEPPEPRLDHTSVRSYPSLQFSKAKLCSSNSNSSSSSCSICLMDYKECDSLRVLPACAHFFHVKCVDPWLRINLTCPVCRTPIALPDICKNL*	147

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso20g1578	146	MobiDBLite	consensus disorder prediction	39	58	-	-
	Gso20g1578	146	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	46	139	IPR013083	-
	Gso20g1578	146	SMART	ring_2	92	133	IPR001841	-
	Gso20g1578	146	MobiDBLite	consensus disorder prediction	39	55	-	-
	Gso20g1578	146	PANTHER	RING-H2 FINGER PROTEIN ATL67	8	145	IPR044289	GO:0016567\|GO:0016740
	Gso20g1578	146	PANTHER	TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED	8	145	-	-
	Gso20g1578	146	Pfam	Ring finger domain	91	134	IPR001841	-
	Gso20g1578	146	ProSiteProfiles	Zinc finger RING-type profile.	92	134	IPR001841	-
	Gso20g1578	146	SUPERFAMILY	RING/U-box	91	140	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso20g1578	Gso-Chr20	46395586	46396026	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso20g1578	12	135	C3H Transcription Factor Family	AT5G06490	34.722	6.78e-22	85.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso20g1578	-		-	gmx:102663850	278.485

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso20g1578	20	46395586	46396026	Gso10g1764	10	44268264	44268710	GST