Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1577 ATGAACAACAGCACCAGCAACAAGGAAGATAATGGCTTTGATCCAAGTGAGTTTACATATGGTGTAGCTTTTGTAATTGGCTTGGTCTTCTTACTTGTCACCATAGCTTTTGCATGTGTGCGTCTTCGCATGGCTCGTGGTCCTAACATGCTAAACATTTTGGCTGGTATTCCACCATCTCGCCAAGCACGATCAGAAGAAGATTCAGCTGAACAGGGGCTTCATCACATTGACACAAGTTTTGAGAGCTATCCGAAGTTGCTTTACTCTCAAGTAGAGAAGGGTTCAAGTAGTTCAAGTGTTGTTTCTTCTAGCTGCTCCATATGCTTAGGTGACTACAAAGAAAGTGACACGTTGAGGTTGCTTCCTCACTGTGACCATCTTTTCCACCTTGCTTGCGTTGATCCTTGGCTTAGGTTGCATTCAACTTGTCCCATATGTAGAAAATCATCTATTCAAGCTTCACATAGTGACTCCAATATTTAG 486 0.4259 MNNSTSNKEDNGFDPSEFTYGVAFVIGLVFLLVTIAFACVRLRMARGPNMLNILAGIPPSRQARSEEDSAEQGLHHIDTSFESYPKLLYSQVEKGSSSSSVVSSSCSICLGDYKESDTLRLLPHCDHLFHLACVDPWLRLHSTCPICRKSSIQASHSDSNI* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1577 161 SMART ring_2 106 147 IPR001841 -
Gso20g1577 161 SUPERFAMILY RING/U-box 88 152 - -
Gso20g1577 161 Pfam Ring finger domain 105 148 IPR001841 -
Gso20g1577 161 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 155 IPR045899 -
Gso20g1577 161 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 152 IPR013083 -
Gso20g1577 161 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Gso20g1577 161 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 155 - -
Gso20g1577 161 CDD RING-H2_PA-TM-RING 108 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1577 Gso-Chr20 46393292 46394262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1577 18 154 C3H Transcription Factor Family AT5G06490 34.839 1.81e-25 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1577 - - gmx:102663718 285.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1577 20 46393292 46394262 Gso10g1765 10 44275870 44276548 GST