Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1575 ATGGGGTATTTGTATCTCTTGCTGATTTCATATTTGTCTGCCTTGTTGTATGCTGCTTCTGCATTGAACTCTGATGGGTTGGCTTTGTTGTCCCTCTTGAGGGACTGGACTATTGTGCCTAGTGACATAAACTCCACATGGAAGTTGTCTGATTCCACTCCGTGCTCATCTTGGGCAGGAGTGCATTGTGATAATGCCAATAATGTGGTTTCTCTAAACCTCACTAGTTATTCTATTTTTGGTCAATTAGGACCTGATCTTGGACGTATGGTTCACTTGCAAACCATAGACTTATCATATAATGATCTATTTGGAAAAATTCCCCCAGAATTAGACAACTGTACCATGCTTGAGTACTTGGACCTTTCTGTAAACAACTTTAGTGGAGGAATACCTCAGAGCTTCAAAAACTTGCAAAATTTGAAGCATATAGACCTTTCATCTAATCCGCTGAATGGTGAAATTCCTGAACCCTTGTTTGACATTTATCACCTGGAAGAAGTGTATCTTAGCAACAACAGTTTGACTGGTTCAATTTCCTCAAGTGTTGGGAATATCACTAAGCTTGTCACACTGGATCTTTCTTATAATCAGCTGTCAGGGACAATTCCCATGTCCATTGGAAATTGTAGTAACTTAGAGAATCTATATTTGGAAAGGAATCAATTAGAGGGAGTTATTCCTGAGAGTCTAAATAATCTCAAAAATCTTCAGGAGTTATTTCTCAATTATAATAACCTTGGAGGCACTGTTCAATTGGGAACTGGAAATTGCAAAAAGTTGTCTAGTTTAAGTCTTTCTTACAATAACTTCAGTGGGGGTATACCATCAAGCTTGGGGAATTGTAGCGGTCTAATGGAGTTTTATGCTGCACGGAGTAACTTAGTTGGCAGTATACCATCAACCTTGGGCCTCATGCCCAACCTTTCTCTTCTAATCATTCCAGAGAACCTATTGTCTGGGAAAATACCTCCACAGATTGGTAATTGCAAAGCACTGGAAGAGTTGCGTTTGAATTCCAATGAACTTGAGGGAGAAATTCCCAGTGAATTGGGAAACTTGAGTAAATTACGCGACCTTAGATTGTATGAAAACCTTTTGACAGGAGAAATTCCACTTGGCATATGGAAAATTCAAAGCCTTGAGCAGATCTATCTGTACATTAATAACCTTTCGGGGGAGCTACCTTTTGAGATGACAGAGCTCAAACATCTTAAGAATATCTCCTTGTTTAACAACCAGTTCTCCGGAGTCATACCTCAAAGTTTAGGAATCAATAGCAGTTTGGTGGTGTTAGACTTCATGTATAATAATTTCACTGGTACCCTTCCACCAAATCTTTGTTTTGGAAAGCAACTGGTGAAGCTGAATATGGGTGTCAATCAATTTTATGGTAACATACCTCCAGATGTGGGAAGGTGTACAACTCTTACAAGGGTGAGACTTGAAGAAAATCATTTCACTGGGTCTCTTCCTGATTTTTATATTAATCCAAATCTCTCTTACATGAGCATCAACAACAACAATATCAGTGGAGCAATTCCATCAAGTTTGGGAAAATGCACAAATCTCTCTCTTTTAAATTTGTCCATGAACAGCTTGACGGGTCTTGTACCTTCAGAGCTTGGAAACCTTGAGAATCTCCAGACTTTGGATCTTTCTCACAATAACTTGGAAGGTCCTTTGCCACATCAGCTGTCAAACTGTGCCAAAATGATCAAGTTTGATGTCAGATTCAATTCCTTGAATGGTTCGGTTCCATCAAGTTTTCGGAGCTGGACAACATTAACAGCTTTAATTCTCTCAGAGAATCATTTTAATGGTGGTATCCCAGCTTTCTTGTCAGAATTTAAAAAGCTCAACGAGTTACAACTTGGTGGAAACATGTTTGGAGGAAACATTCCTAGATCAATCGGAGAGCTGGTGAATTTGATATATGAACTAAATCTAAGTGCTACTGGGCTGATAGGTGAGCTTCCTAGGGAGATTGGAAACCTGAAGAGTCTGCTAAGCCTGGATCTATCTTGGAACAATTTGACAGGAAGTATACAAGTTCTTGATGGGCTCAGTTCATTATCTGAATTCAACATCTCATATAATTCTTTTGAAGGTCCTGTGCCACAACAGCTAACAACATTACCAAACTCTTCTTTATCATTTTTGGGCAATCCTGGCCTGTGTGGCTCGAATTTCACTGAGAGCAGCTATTTAAAGCCTTGTGACACAAATTCAAAAAAGTCAAAAAAGCTCAGTAAAGTTGCAACTGTGATGATAGCACTTGGATCTGCAATATTTGTTGTTCTGCTGCTGTGGTTAGTATATATATTCTTTATCAGAAAAATTAAGCAAGAAGCCATAATCATTAAGGAAGATGATTCTCCAACCCTTCTTAACGAAGTGATGGAAGCTACAGAAAATCTAAATGATGAGTATATTATTGGCAGAGGAGCTCAAGGAGTTGTTTATAAAGCAGCAATAGGTCCAGACAAAACATTGGCTATAAAGAAGTTTGTATTTTCTCATGAAGGGAAAAGCTCAAGCATGACCAGAGAAATTCAAACCCTTGGAAAGATTAGGCATCGAAATTTAGTCAAATTGGAAGGGTGCTGGTTGAGAGAAAACTATGGTCTAATTGCATACAAATACATGCCAAATGGAAGCCTACATGATGCTTTGCATGAGAAGAATCCACCATACTCCTTAGAATGGATTGTTCGGAATAACATAGCACTTGGAATTGCTCACGGATTGACTTATCTCCATTATGACTGTGATCCTGTCATAGTGCACAGAGATATCAAAACAAGCAACATACTTCTAGATTCAGAAATGGAGCCTCATATTGCAGATTTTGGTATTGCTAAACTTATAGATCAGCCTTCTACCTCAACACAGTTATCATCTGTTGCTGGTACACTTGGTTATATAGCACCAGAGAATGCTTATACAACAACAAAGGGTAAGGAATCTGATGTATACAGTTATGGGGTAGTTTTGCTGGAGCTGATATCCAGAAAGAAGCCATTGGATGCATCATTTATGGAAGGAACGGATATAGTTAATTGGGCAAGATCTGTCTGGGAGGAAACGGGAGTTGTTGATGAAATTGTTGATCCAGAGCTGGCTGATGAAATTTCAAATTCTGAAGTGATGAAACAAGTTACCAAGGTGCTTTTGGTGGCTTTGAGATGCACTGAAAAGGATCCACGTAAGAGACCTACGATGAGGGATGTTATCAGGCATTTGTAG 3249 0.3897 MGYLYLLLISYLSALLYAASALNSDGLALLSLLRDWTIVPSDINSTWKLSDSTPCSSWAGVHCDNANNVVSLNLTSYSIFGQLGPDLGRMVHLQTIDLSYNDLFGKIPPELDNCTMLEYLDLSVNNFSGGIPQSFKNLQNLKHIDLSSNPLNGEIPEPLFDIYHLEEVYLSNNSLTGSISSSVGNITKLVTLDLSYNQLSGTIPMSIGNCSNLENLYLERNQLEGVIPESLNNLKNLQELFLNYNNLGGTVQLGTGNCKKLSSLSLSYNNFSGGIPSSLGNCSGLMEFYAARSNLVGSIPSTLGLMPNLSLLIIPENLLSGKIPPQIGNCKALEELRLNSNELEGEIPSELGNLSKLRDLRLYENLLTGEIPLGIWKIQSLEQIYLYINNLSGELPFEMTELKHLKNISLFNNQFSGVIPQSLGINSSLVVLDFMYNNFTGTLPPNLCFGKQLVKLNMGVNQFYGNIPPDVGRCTTLTRVRLEENHFTGSLPDFYINPNLSYMSINNNNISGAIPSSLGKCTNLSLLNLSMNSLTGLVPSELGNLENLQTLDLSHNNLEGPLPHQLSNCAKMIKFDVRFNSLNGSVPSSFRSWTTLTALILSENHFNGGIPAFLSEFKKLNELQLGGNMFGGNIPRSIGELVNLIYELNLSATGLIGELPREIGNLKSLLSLDLSWNNLTGSIQVLDGLSSLSEFNISYNSFEGPVPQQLTTLPNSSLSFLGNPGLCGSNFTESSYLKPCDTNSKKSKKLSKVATVMIALGSAIFVVLLLWLVYIFFIRKIKQEAIIIKEDDSPTLLNEVMEATENLNDEYIIGRGAQGVVYKAAIGPDKTLAIKKFVFSHEGKSSSMTREIQTLGKIRHRNLVKLEGCWLRENYGLIAYKYMPNGSLHDALHEKNPPYSLEWIVRNNIALGIAHGLTYLHYDCDPVIVHRDIKTSNILLDSEMEPHIADFGIAKLIDQPSTSTQLSSVAGTLGYIAPENAYTTTKGKESDVYSYGVVLLELISRKKPLDASFMEGTDIVNWARSVWEETGVVDEIVDPELADEISNSEVMKQVTKVLLVALRCTEKDPRKRPTMRDVIRHL* 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1575 1082 Gene3D Transferase(Phosphotransferase) domain 1 883 1082 - -
Gso20g1575 1082 ProSiteProfiles Protein kinase domain profile. 807 1082 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1575 1082 SMART serkin_6 807 1082 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1575 1082 Pfam Protein kinase domain 810 1081 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1575 1082 SUPERFAMILY L domain-like 256 402 - -
Gso20g1575 1082 Pfam Leucine Rich Repeat 92 114 IPR001611 GO:0005515
Gso20g1575 1082 SUPERFAMILY Protein kinase-like (PK-like) 796 1082 IPR011009 -
Gso20g1575 1082 SUPERFAMILY L domain-like 50 301 - -
Gso20g1575 1082 Pfam Leucine rich repeat N-terminal domain 23 64 IPR013210 -
Gso20g1575 1082 SMART LRR_sd22_2 186 218 - -
Gso20g1575 1082 SMART LRR_sd22_2 138 161 - -
Gso20g1575 1082 SMART LRR_sd22_2 545 571 - -
Gso20g1575 1082 SMART LRR_sd22_2 234 266 - -
Gso20g1575 1082 SMART LRR_sd22_2 666 691 - -
Gso20g1575 1082 SUPERFAMILY RNI-like 401 715 - -
Gso20g1575 1082 ProSiteProfiles Leucine-rich repeat profile. 668 690 IPR001611 GO:0005515
Gso20g1575 1082 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 3 1081 - -
Gso20g1575 1082 Gene3D Phosphorylase Kinase; domain 1 777 882 - -
Gso20g1575 1082 ProSitePatterns Serine/Threonine protein kinases active-site signature. 928 940 IPR008271 GO:0004672|GO:0006468
Gso20g1575 1082 SMART LRR_typ_2 521 544 IPR003591 -
Gso20g1575 1082 SMART LRR_typ_2 354 378 IPR003591 -
Gso20g1575 1082 SMART LRR_typ_2 90 114 IPR003591 -
Gso20g1575 1082 SMART LRR_typ_2 211 233 IPR003591 -
Gso20g1575 1082 SMART LRR_typ_2 666 688 IPR003591 -
Gso20g1575 1082 SMART LRR_typ_2 234 258 IPR003591 -
Gso20g1575 1082 SMART LRR_typ_2 186 210 IPR003591 -
Gso20g1575 1082 SMART LRR_typ_2 138 162 IPR003591 -
Gso20g1575 1082 SMART LRR_typ_2 545 569 IPR003591 -
Gso20g1575 1082 PRINTS Leucine-rich repeat signature 189 202 - -
Gso20g1575 1082 PRINTS Leucine-rich repeat signature 545 558 - -
Gso20g1575 1082 Gene3D Ribonuclease Inhibitor 289 401 IPR032675 -
Gso20g1575 1082 Gene3D Ribonuclease Inhibitor 402 737 IPR032675 -
Gso20g1575 1082 Gene3D Ribonuclease Inhibitor 27 135 IPR032675 -
Gso20g1575 1082 Gene3D Ribonuclease Inhibitor 210 288 IPR032675 -
Gso20g1575 1082 Gene3D Ribonuclease Inhibitor 136 209 IPR032675 -
Gso20g1575 1082 Pfam Leucine rich repeat 117 175 IPR001611 GO:0005515
Gso20g1575 1082 Pfam Leucine rich repeat 498 558 IPR001611 GO:0005515
Gso20g1575 1082 Pfam Leucine rich repeat 188 247 IPR001611 GO:0005515
Gso20g1575 1082 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 3 1081 - -
Gso20g1575 1082 Pfam Leucine Rich repeat 667 681 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1575 Gso-Chr20 46380174 46383983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1575 13 1082 Receptor kinase-like Gene Family AT1G73080 51.787 0.0 1034
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso20g1575 Pkinase 7.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1575 - - gmx:100802056 2079.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1575 20 46380174 46383983 Gso20g1575 20 46380174 46383983 ECH
Gso20g1575 20 46380174 46383983 Gso10g1767 10 44286228 44289894 GST