Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1568 ATGATTGGAGGGAAGCAGAGAGCGGCAAATGCAAAAAAGGAAGAGAAGAAAGGAAAAGCAGCAGAAAGTGACAAAATCCCAGTAAAGAGTGACAGTGCCAGCTCCCTCAAGCCAAAGTCTTGTGCTTTTCACATCCCCATTTTCCCATTTCCCTTTCTGCTTCCTCTTTCGCCAAATGGGTCTCCCATAACACAATCTTCACCTTTTTTTTTTCCTCTTTCTTTCTTCTTCGCTTCTCGGTGGGGCTTCAAGTTTCACCATAGGATGTTTTCTAGGTTGATACATCCTCATGAAGGGCAGGAAGACATGCAGGGTGGCTCCAATCACGCTCACCTCGGAGACCCTTGTCTTGTTTTAACCTCCGATCCCAAACCTCGTCTTCGTTGGACCGCTGACCTTCATGAACGCTTTGTTGATGCTGTCACTCAACTTGGGGGTGCCAGTAAAGCCACTCCAAAAGCAATCATGAGGACCATGAATGTCAAGGGTTTGACGCTCTATCATTTGAAGAGTCATCTTCAGAAGTACAGGCTAGGTAAGCAATCAGGAAAAGATTCTGATGAGGGATGCAAAGATGCTTCATATCTTCAAGAAAGCCCTGGTACTGATAACTCTTCTCCAAAGTTACCAGATGCTAACGAGGGTCATGAAGTCAAGGAGGCATTAAGAGCACAGATGGAAGTGCAAAGTAAACTACACTTACTAGTGGAGGCAGAGAAGCACTTGCAAATTCGCCAGGATGCAGAGCGAAGATACATGGGCATGCTTGAGCGAGCGTGTAAGATGTTGGCAGATCAATTTATTGGGGATGTAACTATTGACATGGACGGCCAAAAATTTCAAGGGCTGGAAAGCAAAACATCCAGAAGTTCCCTAGTTGATCACGTTGGCTTTTATCCCCAAGCGTGTACTGAGGTCGGCGGAATGCATGCTTCAGTAGTATCACCTATTCTTCAACCTCAAGGGGCTGACTGTTTCACTGAAAGTTGCCTAACATCACTTGAGAGTCTGGGAGGGTTGACACTAGAAGGATCTCCTGGCGGATCGAAGAAGAGGATGCTGAACTTGGACTCGATGGTAGCACCTTTGATCTGGAGTGAAGCCAACACCAGAACTCAAGGAATTCATTTAGCCAAAGTTAATCCTTCAGGAATGACTAGGTACGGCATGTAG 1173 0.4604 MIGGKQRAANAKKEEKKGKAAESDKIPVKSDSASSLKPKSCAFHIPIFPFPFLLPLSPNGSPITQSSPFFFPLSFFFASRWGFKFHHRMFSRLIHPHEGQEDMQGGSNHAHLGDPCLVLTSDPKPRLRWTADLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLYHLKSHLQKYRLGKQSGKDSDEGCKDASYLQESPGTDNSSPKLPDANEGHEVKEALRAQMEVQSKLHLLVEAEKHLQIRQDAERRYMGMLERACKMLADQFIGDVTIDMDGQKFQGLESKTSRSSLVDHVGFYPQACTEVGGMHASVVSPILQPQGADCFTESCLTSLESLGGLTLEGSPGGSKKRMLNLDSMVAPLIWSEANTRTQGIHLAKVNPSGMTRYGM* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1568 390 Gene3D - 123 181 - -
Gso20g1568 390 SUPERFAMILY Homeodomain-like 124 180 IPR009057 -
Gso20g1568 390 MobiDBLite consensus disorder prediction 1 36 - -
Gso20g1568 390 Pfam Myb-like DNA-binding domain 127 177 IPR001005 -
Gso20g1568 390 MobiDBLite consensus disorder prediction 179 213 - -
Gso20g1568 390 Pfam MYB-CC type transfactor, LHEQLE motif 217 262 IPR025756 -
Gso20g1568 390 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 124 179 IPR006447 GO:0003677
Gso20g1568 390 MobiDBLite consensus disorder prediction 8 26 - -
Gso20g1568 390 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 69 390 - -
Gso20g1568 390 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 121 181 IPR017930 -
Gso20g1568 390 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 69 390 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1568 Gso-Chr20 46298842 46302287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1568 105 299 G2-like Transcription Factor Family AT3G24120 52.381 4.90e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gso20g1568 Myb_DNA-binding 1.9e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1568 - - gsj:114401232 715.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1568 20 46298842 46302287 Gso10g1775 10 44357250 44360659 GST