Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1562 ATGGAAGCACCAGAAGAACTCTCTTTGGGGGGCTCAAAAGATCACACCAACATTGTCAAAGGAAAAAGAACCAAAAGGGTAAGGCCACAATCCCCTATGCCATTCTCCATCACCTCCAATTCTTCCACCGGAGAAGGAGAAAAAGAAGAAGGTTGCAACAACGGTGATGATGACAACAACAACATGAAAAATGAAGATATCAATAACATCAACAGCTCTCCCACCTCTTCTGCAGGATTACAAGACAGCACAGATGAAGAGGAGGACATGGCGAATTGCCTCATCCTTCTAGCTCAAGGGCAATCACGGGAATCCCCGAAACACGCGGAGGAGGACGCCGGCATGAACTCCGCCAAGTACAGCAGTAGAAAATTCTTGGAAGCTGCTACCTTGGGGTCTAGCAGGGCAGGGTACTATGTCTATGAATGCAAGACATGTAACAGAACCTACCCTTCATTTCAAGCACTTGGAGGCCACAGGGCCAGTCACAAGAAGCCTAAGGCATTGATGGCTATTGGCCTAGAGAAGAAACAGCAACACCTTTTGTCATCAGATGAGGAAGAGTTTCAATTGAAGACCAATAAGTCACCATTTTCCCTTCAATTGAATACAAAGGGGAATTTGTACAGCAACAACAACAAGTCCAAGGTGCACGAGTGCTCCATCTGTGGTGCTGAATTCACATCGGGACAGGCATTGGGTGGCCACATGAGACGCCACCGCGCTCCGGTCGGAACCACCACCCCCGCCACACTCTCCTTCACCCCATTGGCTTTGGAACCAGAAGAAGATCACCCCAGAAAGAAAAGGAATGTGTTGAATTTGGATTTGGATCTCAACCTTCCTGCCCCAGGAGATGATCATAGAGAATCCAAGTTTGCCTTCGCATCCAAGCAACAACAACAACAACATCAACAACCACAACAACAGCAACAGCCACAAACAAGTCTTGTCTTCCCCGCACCAGCTTTGGTGGATTGCCATTACTAA 990 0.4778 MEAPEELSLGGSKDHTNIVKGKRTKRVRPQSPMPFSITSNSSTGEGEKEEGCNNGDDDNNNMKNEDINNINSSPTSSAGLQDSTDEEEDMANCLILLAQGQSRESPKHAEEDAGMNSAKYSSRKFLEAATLGSSRAGYYVYECKTCNRTYPSFQALGGHRASHKKPKALMAIGLEKKQQHLLSSDEEEFQLKTNKSPFSLQLNTKGNLYSNNNKSKVHECSICGAEFTSGQALGGHMRRHRAPVGTTTPATLSFTPLALEPEEDHPRKKRNVLNLDLDLNLPAPGDDHRESKFAFASKQQQQQHQQPQQQQQPQTSLVFPAPALVDCHY* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1562 329 PANTHER ZINC FINGER PROTEIN ZAT5 12 329 - -
Gso20g1562 329 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 12 329 - -
Gso20g1562 329 SMART c2h2final6 218 240 IPR013087 -
Gso20g1562 329 SMART c2h2final6 141 163 IPR013087 -
Gso20g1562 329 Gene3D Classic Zinc Finger 139 240 - -
Gso20g1562 329 ProSiteProfiles Zinc finger C2H2 type domain profile. 141 168 IPR013087 -
Gso20g1562 329 MobiDBLite consensus disorder prediction 49 63 - -
Gso20g1562 329 MobiDBLite consensus disorder prediction 278 316 - -
Gso20g1562 329 ProSitePatterns Zinc finger C2H2 type domain signature. 220 240 IPR013087 -
Gso20g1562 329 ProSitePatterns Zinc finger C2H2 type domain signature. 143 163 IPR013087 -
Gso20g1562 329 SUPERFAMILY beta-beta-alpha zinc fingers 140 240 IPR036236 -
Gso20g1562 329 MobiDBLite consensus disorder prediction 1 88 - -
Gso20g1562 329 ProSiteProfiles Zinc finger C2H2 type domain profile. 218 240 IPR013087 -
Gso20g1562 329 MobiDBLite consensus disorder prediction 64 81 - -
Gso20g1562 329 Pfam C2H2-type zinc finger 140 166 - -
Gso20g1562 329 Pfam C2H2-type zinc finger 217 243 - -
Gso20g1562 329 MobiDBLite consensus disorder prediction 295 316 - -
Gso20g1562 329 MobiDBLite consensus disorder prediction 31 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1562 Gso-Chr20 46259294 46261041 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1562 1 329 C2H2 Transcription Factor Family AT5G04390 44.565 2.09e-84 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso20g1562 zf-C2H2_6 6.5e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1562 - - gmx:100799383 568.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1562 20 46259294 46261041 Gso10g0513 10 5644504 5645708 GST