Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1557 ATGGGTCGCGAAACTATGTGCCTTTCAACCCCACCACCAACCACTGCCACCACCACAGTGAACCCAGTGCCGCCACCGCCACCAGCACCACCTACCTCTCTTGCTCCAGGCTTCAGGTTCCACCCAACTGATGAGGAGCTTGTTATTTATTACCTCAAGCGCAAGGTTTCTGGCAAAAGCTTCCGATTTGATGCCATATCTGAGGTTGACATATACAGGAGCGAACCCTGGGACCTAGCAGACAAGTCAAGGTTGAAGACTAGGGACCAGGAGTGGTATTTTTTCAGTGCATTGGACAAGAAATATGGGAATGGTGGGAGGATGAACAGGGCTACCAGCAAAGGGTACTGGAAAGCCACTGGGAATGATCGACCGGTGAGGCATGACCAAAGGACCGTGGGGCTGAAGAAAACGTTGGTGTTTCATAGTGGCAGAGCTCCTGATGGGAAGAGGACTAACTGGGTCATGCATGAGTACAGGCTTGTTGAAGAGGAGCTTGAGAGGGCTGGGACTGGATCCTCTCAGCCTCAGGATGCGTATGTTTTGTGTAGAGTGTTTCACAAAAATAACATAGGACCTCCAAATGGGCAACGGTATGCGCCCTTCATTGAAGAAGAGTGGGATGACGCATCAGGAATGGTTCCAGGGGCAGACCATGTGGATAACCGCTCTTTTGCCCACCAACCACGTGTTGAAGGCAATGGTGGTGTTTTATGCGCTGAAGGGAGAAATGGTGTTGTACAGGACACTCAATCTTTCAACAAAGCTCCATTTGATGTGAACAAGCTTCCTATAGAAACTCAAAATCTTCTAGCTGTGTGCAAGAGGGAAAGCATGGCTGAGTATCCATCACCTGAAAAGGATGATAATAATTGTAAGCACATGGATGACTACCCTTCACCTCAAACAGATAATCCAAAGCCTTTCTCTCAAATATACAAACGAAGGCGTCATAACTTGAACTCCAACAACTCTAATGTTTCTGGAGATTCAGTCCGAACCAGCCAGGATCCGTGCTCCTCTACAATAACTACTGCTGCAACTGCACTCCCAACCGCAACTGTTGCTGGCACAGCCACCAACACTGCACCGAAAAAACATTTTCTGTCTGCACTGGTGGAGTTTTCCCTGCTAGAATCCCTTGAATCAAAGGACAACCTTGCTTCAATTAAGGCACCGGATTTTGACACTGAAAATCTTGAGTCATCCATGCCTCCAAGTTGCGCAAAGTTCATCAAGCAAATGCAGAGTGAGATGCAGAAGCTTTCAGTTGAAAAGGAGACGATAAGGTTTGAGATGATGAGCGCACAAGCGATGATTAACATTCTCCAGTCTCGCATCGACGTTCTCAGCAAAGAAAATGAGGATTTGAAGAGGATGGTGGCCCAAAATCCATAG 1398 0.4764 MGRETMCLSTPPPTTATTTVNPVPPPPPAPPTSLAPGFRFHPTDEELVIYYLKRKVSGKSFRFDAISEVDIYRSEPWDLADKSRLKTRDQEWYFFSALDKKYGNGGRMNRATSKGYWKATGNDRPVRHDQRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRLVEEELERAGTGSSQPQDAYVLCRVFHKNNIGPPNGQRYAPFIEEEWDDASGMVPGADHVDNRSFAHQPRVEGNGGVLCAEGRNGVVQDTQSFNKAPFDVNKLPIETQNLLAVCKRESMAEYPSPEKDDNNCKHMDDYPSPQTDNPKPFSQIYKRRRHNLNSNNSNVSGDSVRTSQDPCSSTITTAATALPTATVAGTATNTAPKKHFLSALVEFSLLESLESKDNLASIKAPDFDTENLESSMPPSCAKFIKQMQSEMQKLSVEKETIRFEMMSAQAMINILQSRIDVLSKENEDLKRMVAQNP* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1557 465 MobiDBLite consensus disorder prediction 281 309 - -
Gso20g1557 465 Gene3D NAC domain 43 191 IPR036093 GO:0003677|GO:0006355
Gso20g1557 465 PANTHER NAC DOMAIN-CONTAINING PROTEIN 78-LIKE 26 462 - -
Gso20g1557 465 SUPERFAMILY NAC domain 31 189 IPR036093 GO:0003677|GO:0006355
Gso20g1557 465 Coils Coil 412 460 - -
Gso20g1557 465 MobiDBLite consensus disorder prediction 281 295 - -
Gso20g1557 465 MobiDBLite consensus disorder prediction 319 338 - -
Gso20g1557 465 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 26 462 - -
Gso20g1557 465 ProSiteProfiles NAC domain profile. 34 188 IPR003441 GO:0003677|GO:0006355
Gso20g1557 465 MobiDBLite consensus disorder prediction 17 34 - -
Gso20g1557 465 MobiDBLite consensus disorder prediction 1 34 - -
Gso20g1557 465 Pfam No apical meristem (NAM) protein 36 161 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1557 Gso-Chr20 46198426 46205944 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1557 1 459 NAC Transcription Factor Family AT3G10480 43.502 6.30e-118 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso20g1557 NAM 3.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1557 - - gmx:100808783 867.455