Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1555 ATGGCACGGATGGGCCCAGGGTTCCGATTCCACCCCACCGACGAAGAGCTGGTGGTGTTCTACCTGAAGCGCAAGATGACCGGAAACCTCTCCCGCTACGACCACATCGCCGTTGTCGACGTCTACAAGCTCGAGCCCTGGGACCTTCCCCCTCTGTCGAAGCTGAAGACGAAGGACTTGGAATGGTACTTCTTCAGCGCGCTGGACCGCAAGTACGGAAACGGGTCGAGGACGAACCGCGCCACCGATAGGGGCTACTGGAAGACCACCGGAAAAGACCGCCCCGTCACCCACGGCGACCGCACCGTCGGAATGAAGAAGACGCTCGTTTACCACAGCGGCCGGGCCCCACACGGGCGCCGCACCAATTGGGTCATGCACGAGTACAAGATGCTCGACGAGGAATTGGCACGTGCCGGCACAGTGCCGGATGTGTTTGTGGTGTGTAGGATTTTCGAGAAGAGTGGTTCTGGGCCGAAGAATGGGGCAAAATATGGTGCTCCCTTAGATGAGAAGGAGTGGGATGTTGAGGATGAGCAGGAGGAGGAGGAGGAGGAGAATGAGCAGAAGGACGTGGCTCCCTTGCTGGTTCCTCATAACGCGGTGGCTCCTCCTCCTCCCTTGTCGGTAGTTGCTGATAATGCGGAGGCTCATCCTCCTTTGACGGCAACTGTTGATAATAAATATATGGTGGCTCCTCCTCCTTCCTTTCAGGCTAATTTTGATGATGAGGTTTTCAATGCTGGGGCCTATGTTGAAACCAACGACCTTGACATGGAGCTTAATTGGAATGATATAATTGGGAGTGATACTTTTCCATCACTGAACTTTCATCATGGGGAGTGTAGTAGCCATGCTGAGTATTCCAAAGTATTCATCAAGGATCAGGAGCCATCAGCAGGCACTTTTGGAATTTCTCGGCCTGAAAATGACTGGCCTCTTGATATGACTGAGCAACATGGCGTGGATACAAATTCAGTGAACAACAGAGACAATGGTGAGCTGATCAATATTGGCAATCATCTGAATTTTAATGATGCATCAAATGATATGAATCTGGATCTGTTCTGGGATGCCAACGAGAATCTTCCGACTGATGGATCATTCTTGGAATACAATGATATTGCAATTGGGAATGGGAGTAGATCTACTGAGGCTGATCCTCCTGCGAATGACATTCTAGACGAGTATCTTTCACTCCCTGATGATGATATTTACAAGTATATATCTTTTGATTCTCCTCAGATTCAAGAGAGTGAAAATTTTATTCCCAACCAAGGATCACCTTTCACTCGGCAGAATGTGGAGGGAGAAACTGCTGATAAAGCTGTGGTTAGTAATCATAATTCTGAATCACAAACCAGAAATGAGGCTTCTTCAGTGCAGAATACACATGAGGCAAAGTTTGCACCAGGAAGTACAAATCCACTTGTTAAGCAGGCCTATGGTTGGTTAGCCAGCATCCCTGCTGCGCCTGCACATGCTATGGAGTTTCCTGCTAAGGAGATTGCTCTTGGGCTTCATCCTGTAGCTCAGTCTTCCCATCCAGCTCATATAACTACAGGTATGATCAGCATAACAGACATTACTTTAAGAGGCAATGCGATGGATTGGACGATGGGCAAAAATGGAGGGTTTAGCACTGTAATATCCACTGGGTTTTGTCAACCGGATGTTAATTCGGATGCTTTGATACCTGTTTCTGGCAAGACTGCATTTGTGTTGTCGCATGGCTGGATTTTCCTGACTGGTTTCTCTGTTCTTATTCTTTCACTGAGTTGCAAGATCGGAAGCATCATGTATACTGGTAAATGA 1815 0.4832 MARMGPGFRFHPTDEELVVFYLKRKMTGNLSRYDHIAVVDVYKLEPWDLPPLSKLKTKDLEWYFFSALDRKYGNGSRTNRATDRGYWKTTGKDRPVTHGDRTVGMKKTLVYHSGRAPHGRRTNWVMHEYKMLDEELARAGTVPDVFVVCRIFEKSGSGPKNGAKYGAPLDEKEWDVEDEQEEEEEENEQKDVAPLLVPHNAVAPPPPLSVVADNAEAHPPLTATVDNKYMVAPPPSFQANFDDEVFNAGAYVETNDLDMELNWNDIIGSDTFPSLNFHHGECSSHAEYSKVFIKDQEPSAGTFGISRPENDWPLDMTEQHGVDTNSVNNRDNGELINIGNHLNFNDASNDMNLDLFWDANENLPTDGSFLEYNDIAIGNGSRSTEADPPANDILDEYLSLPDDDIYKYISFDSPQIQESENFIPNQGSPFTRQNVEGETADKAVVSNHNSESQTRNEASSVQNTHEAKFAPGSTNPLVKQAYGWLASIPAAPAHAMEFPAKEIALGLHPVAQSSHPAHITTGMISITDITLRGNAMDWTMGKNGGFSTVISTGFCQPDVNSDALIPVSGKTAFVLSHGWIFLTGFSVLILSLSCKIGSIMYTGK* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1555 604 MobiDBLite consensus disorder prediction 172 189 - -
Gso20g1555 604 Gene3D NAC domain 13 157 IPR036093 GO:0003677|GO:0006355
Gso20g1555 604 PANTHER NAC DOMAIN-CONTAINING PROTEIN 53-LIKE 4 182 - -
Gso20g1555 604 PANTHER NAC DOMAIN-CONTAINING PROTEIN 53-LIKE 357 599 - -
Gso20g1555 604 MobiDBLite consensus disorder prediction 445 470 - -
Gso20g1555 604 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 357 599 - -
Gso20g1555 604 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 182 - -
Gso20g1555 604 MobiDBLite consensus disorder prediction 160 191 - -
Gso20g1555 604 Pfam No apical meristem (NAM) protein 6 130 IPR003441 GO:0003677|GO:0006355
Gso20g1555 604 SUPERFAMILY NAC domain 3 154 IPR036093 GO:0003677|GO:0006355
Gso20g1555 604 ProSiteProfiles NAC domain profile. 4 154 IPR003441 GO:0003677|GO:0006355
Gso20g1555 604 Coils Coil 169 189 - -
Gso20g1555 604 MobiDBLite consensus disorder prediction 445 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1555 Gso-Chr20 46185591 46189155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1555 356 600 NAC Transcription Factor Family AT5G04410 30.800 1.10e-21 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso20g1555 NAM 3.3e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1555 - - gmx:100808260 1211.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1555 20 46185591 46189155 Gso10g1784 10 44450059 44453574 GST