Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1553 ATGTCAGGAGAGCAAATCTTGTCATCCAATGAAGAATATAATAAATCTCAGCCTCCATTTGGTACCAAGAGTGGTTACGATTCAAGAACAGGCATCTATCACTCTCTAATTAAGCTTGTCACCAAGCATGAAATCCCAACAAGGCCTGATCTTAACACTGCCAATTTTGTGCTGTCACAGTTCCCACAGACACACCTTGCTGAGGCAAGAATTGCATTCATTGATTCAGGTACTAGTAGGAGTGTAAGCTATGGTGAGCTAAAAAGGTCTATTTACTCCCTTGCATCAGCTTTGTTCCATGGACTTGAGATTAGGAAAGGTGATGTTGTATTTGTATTGTCACCAAACTCAACCTTGTACTCAGCCATATGCCTAGCTGTTTTATCAGTTGGAGCCGTTCTTACCACTGCCAACCCCATCAACACTGCAACAGAAATTGCGAAGCAAGTGCATGATTCGGGTGCTAAACTAGCCATCTCAGCACCTGAGGAGCTACACAAATTGGTCCCAACTGGGGTTCCTACAATTCTCACTTCTCGTCCTTCTGATGGCAACATGTTATCAGTTGAAGAGTTAATAGAAGGCTGTTGTACTTCACCAGAGTTGCCTCAAGTTCCTGTGGCACAATCAGACACTGCTGCTATACTTTACTCTTCAGGAACCACAGGGGTAAGCAAAGGTGTGGTTCTGACACATGCAAATCTCATTTCCATAATGAGACTACTCTTTTGGTCTGCTGATGTAAGTGGATCCCAAGATGATGTTTTCTTGGCCTTCATTCCAATGTTTCACATCTATGGACTTGTGTTCTTTGGATTAGGATTGTTGTGTGTTGGTGTCACGACAATTTTGATGCAGAAATATGACTTCCAAGGCATGCTTGATGCAATCCAGAAGCACAAGGTTAACAACATAGCAGCAGTGCCACCAGTGATCCTTGCACTAGTAAAACAAGCAAAGAAAACTAGGTGTGACTTGTCCAGCCTAAGAAGGGTGGGGTCAGGTGCTGCACCTTTGAGCAAGGAAGTGGCACAAGAGTTTAGAAGGATGTTTCCTTGGGTTGAACTAAGGCAAGGTTATGGCCTAACAGAAAGTAGTGGTGGAGCAACATTTTTTCCCTCGGATAAAGATGCTAAAGCTCATCCAGATTCATGTGGGAAGCTGATTCCAACTTTTTGTGCAAAAGTTGTAGACATCGAAACGGGGAAGCCTTTGCCTCCTCATAAAGAGGGAGAATTATGGTTCAAAAGTCCTACTATTATGAAAGGATATCTAGGAAATTTGGAGGCAACAAGTGCAACTATTGATTCAGAAGGTTGGTTGAAGACTGGTGATCTTGGTTACATTGATGAGAAGGGATTTGTTTATATAGTTGAACGAATAAAGGAGCTAATCAAGCACAATGGTTATCAGGTGGCTCCTGCAGAACTGGAATCTGTGCTGCTAAGTCATCCCCTTATAGTTGATGCAGCAGTTATACCGGTTGAAGATGAAGAAACTGGACAGATACCAATGGCATATGTGGTGAGAGCAGCTGGTTCTGAACTCTCAGAAAACCAAGTCATTCAATTTGTTGCAGGCCAGGTTGCTCCATATAAGAAAGTGAGAAAGGTGAGTTTCATTGTCACTATTCCAAAGTCAGCTGCTGGCAAGATATTGCGGAAGGATCTTGTTTCTCAAAGCAAATATCAACTTGTCTCCAAGTTATGA 1710 0.4263 MSGEQILSSNEEYNKSQPPFGTKSGYDSRTGIYHSLIKLVTKHEIPTRPDLNTANFVLSQFPQTHLAEARIAFIDSGTSRSVSYGELKRSIYSLASALFHGLEIRKGDVVFVLSPNSTLYSAICLAVLSVGAVLTTANPINTATEIAKQVHDSGAKLAISAPEELHKLVPTGVPTILTSRPSDGNMLSVEELIEGCCTSPELPQVPVAQSDTAAILYSSGTTGVSKGVVLTHANLISIMRLLFWSADVSGSQDDVFLAFIPMFHIYGLVFFGLGLLCVGVTTILMQKYDFQGMLDAIQKHKVNNIAAVPPVILALVKQAKKTRCDLSSLRRVGSGAAPLSKEVAQEFRRMFPWVELRQGYGLTESSGGATFFPSDKDAKAHPDSCGKLIPTFCAKVVDIETGKPLPPHKEGELWFKSPTIMKGYLGNLEATSATIDSEGWLKTGDLGYIDEKGFVYIVERIKELIKHNGYQVAPAELESVLLSHPLIVDAAVIPVEDEETGQIPMAYVVRAAGSELSENQVIQFVAGQVAPYKKVRKVSFIVTIPKSAAGKILRKDLVSQSKYQLVSKL* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1553 569 MobiDBLite consensus disorder prediction 1 24 - -
Gso20g1553 569 Gene3D - 463 565 IPR045851 -
Gso20g1553 569 ProSitePatterns Putative AMP-binding domain signature. 215 226 IPR020845 -
Gso20g1553 569 Pfam AMP-binding enzyme 69 466 IPR000873 -
Gso20g1553 569 Gene3D - 39 462 IPR042099 -
Gso20g1553 569 PANTHER AMP-DEPENDENT SYNTHETASE AND LIGASE FAMILY PROTEIN-RELATED 18 568 - -
Gso20g1553 569 MobiDBLite consensus disorder prediction 1 26 - -
Gso20g1553 569 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 18 568 - -
Gso20g1553 569 Pfam AMP-binding enzyme C-terminal domain 476 551 IPR025110 -
Gso20g1553 569 CDD 4CL 45 557 - -
Gso20g1553 569 SUPERFAMILY Acetyl-CoA synthetase-like 67 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1553 Gso-Chr20 46164927 46167473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1553 27 565 Monolignol Biosynthesis Gene Families AT1G20500 44.465 4.72e-156 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1553 K10526 - gmx:100796728 1097.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1553 20 46164927 46167473 Gso10g1787 10 44472035 44474749 GST