Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1547 ATGACAGATTTTCAGCCGCTACAGCAGAAGCCTGAGCCTGCTGATGCCCATGCTGAGTTTGAGCTTGGACTGGAGGAGTTTATGCGTGGGCACTTGGATGATTGTATGTCGTTTGCTTCGTGTAGCTCGTCTCGTGCTCCGGATGATGAGGATGACGAGGGTGATCAGCTGGTTCGGAGGAGAAGGAGGTCTGACCTTGAAGGGGATGATTTGGCTGAGTCGTCGGCTGCACGCCGGCGGCATTCGAGGATTTTGAGCAGGTGGGCTGCACGGCAGGCACAGGAGATGATAACTACTATAGAGAGGAGGAATCGAGAGTCTGAGTTGATGGCGCTTGCGGGGTTGCATACCGTGTCAATGCTGGATTCTTCTTTTCTGAGGGGTTCGCAGTCTCCAACTTCTGGCCAGGAGGGGGCTGTGGAGAGGCCGAGCACTCAGGCGTCTGCCATTCTGCAGATGTGGCGTGAGTTGGAAGATGAGCATTTGTTGAACCGGGCGCGGGAAAGGATGAGGGTAAGGTTGCGGCACCAGAGAAATTCTGACTCTAATACCAATGTGTCCAGTACCATGTCTGATAGTCGAGGCAGTGAGAACCAAGGGAGTTTGGGGGATGCAAGTGAAAGTGAAACTGATTATGGTACTTGGTCACATGATCAGATTGGATCAAGGAATGCACATGGGGATCATAATGGGTCTAGCAGGGAACAATCTCCTGATCTTGGCGAAGTTGAGAGGGAGAGAGTTAGACAGATTGTTCAGGGATGGATGGAAAGTGGTATTAGTGATCATTCATCTAATGTGAGTCAGAGAAACAATAACCGGAGAGCAGAATGGCTTGGAGAAACGGAGCGTGAGAGGGTAAGAAATATCAGGGAATGGGTGCAAATGATTAGCCAGCAGAGAAGTTCGCGTGGGAGCCGGAGGGATGCTCAAGTAAGTGAGGGTGCTCAATCTGATCGAGCCCGCGATGTAGTAGCTGATAATGATGAGAGTCAGCCAGAGCATGTTCGGCGGGACATGTTAAGGTTGCGTGGAAGACAGGCTCTAGTTGATTTGCTTGTGAGGATAGAAAGGGAAAGACAAAGAGAGCTGCAGGGCTTGTTGGAGCACCGAGCTGTTTCTGATTTTGCTCATCGCAACCGTATTCAGTCACTGCTCAGAGGTAGATTCCTCCGAAATGAAAGAACTGTTGAAGATGAGAGGCCACCGTCTATGGCAGCAAGTGAATTAGTTCAGCTAAGACAACGGCACACGGTCTCTGGTTTAAGGGAGGGGTTTCGTTCAAGATTAGAAAATATTGTTCGTGGTCAAGCAGGCACCAGTCCTGATTCCACATCAAATAGTAACGCGAGTGAAACAAGAGGTGATGGGAGCCAAGCAAACAGTCTGGTAGATGGCCAACAAGAAAACTATGAACAGCAGATTAGGAGCCTGGAAACTGATGTGCGTCAGTTGCCTAATCGAACAGGAACTTTGGAGAGTAGCACAAGTGAGAGTATTAGTTGGCAAGAAGCTAGTAATCAAGGGGGGAATTGGCAGGAACAAATTGCTGAAGAAGGGGGAGGAAACTGGCAACGGAGTCCATTTGATCAGACGAGAGATGGAAGGGCAGTCAGTGATTGGCCACAGGAACCTCCCAGAAACTTAACTGGGGAAGATCCTCATCCCCAGGAAGCTCAAAGAATTTGGCATGATGATAACACAAGGGAAACTGTTGGTAATTGGTCCGAAGGACCTTCTGGAGCTTCGAGGAATCGCCGTGGGGTTCCCATAAGAAGATTCAATAGATTTCATCCACCTGATGATGATAATGTATACAGTATGGAGCTTAGAGAACTTCTGAGCAGGAGAAGTGTTTCTAACCTTCTTCGTAGTGGTTTCCGTGATAGTCTGGACCAATTAATACAGTCATATGTGGAAAGGCAAGGTCGTGCACCAATTGACTGGGATTTGCATCGGAACTTGCCAACACCAACTCCTGCCTCTCCTGAACGGGACCCAGACCAGCAGGGTGAGGAACGTGATGAGGGTCAACATGAAACCATTAACAGGCCTTCACTGGTGTTGCCTTCTCCACCAGTACCTCCGCCACAACCTCTGTGGCACCAGGATTTGCATCAAACTGGATGGTCTCGCCATAGCATGCATCGTTCTGAAATTGAGTGGGAGATAATGAATGATTTAAGATCAGACATGGCAAGACTTCAGCAAGGCATGAATCACATGCAGAGGATGTTGGAGGCCTGCATGGATATGCAACTGGAGTTGCAGCGCTCTGTCAGACAGGAAGTATCTGCTGCTCTGAACCGCTCAGGATTGAGTGCTGAGACATCTGATGATGGGTCTAAATGGGGGCATGTGAAGAAAGGAACTTGCTGTGTTTGTTGTGATAACCATATCGATTCTCTTTTGTACAGATGTGGGCACATGTGCACTTGTTCAAAATGTGCCAATGAGTTAATTCGTGGTGGTGGTAAATGTCCTTTATGCCGAGCACCAATTGTTGAGGTGGTCCGAGCATATTCCATACTGTAA 2535 0.488 MTDFQPLQQKPEPADAHAEFELGLEEFMRGHLDDCMSFASCSSSRAPDDEDDEGDQLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAARQAQEMITTIERRNRESELMALAGLHTVSMLDSSFLRGSQSPTSGQEGAVERPSTQASAILQMWRELEDEHLLNRARERMRVRLRHQRNSDSNTNVSSTMSDSRGSENQGSLGDASESETDYGTWSHDQIGSRNAHGDHNGSSREQSPDLGEVERERVRQIVQGWMESGISDHSSNVSQRNNNRRAEWLGETERERVRNIREWVQMISQQRSSRGSRRDAQVSEGAQSDRARDVVADNDESQPEHVRRDMLRLRGRQALVDLLVRIERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNERTVEDERPPSMAASELVQLRQRHTVSGLREGFRSRLENIVRGQAGTSPDSTSNSNASETRGDGSQANSLVDGQQENYEQQIRSLETDVRQLPNRTGTLESSTSESISWQEASNQGGNWQEQIAEEGGGNWQRSPFDQTRDGRAVSDWPQEPPRNLTGEDPHPQEAQRIWHDDNTRETVGNWSEGPSGASRNRRGVPIRRFNRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRDSLDQLIQSYVERQGRAPIDWDLHRNLPTPTPASPERDPDQQGEERDEGQHETINRPSLVLPSPPVPPPQPLWHQDLHQTGWSRHSMHRSEIEWEIMNDLRSDMARLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSGLSAETSDDGSKWGHVKKGTCCVCCDNHIDSLLYRCGHMCTCSKCANELIRGGGKCPLCRAPIVEVVRAYSIL* 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1547 844 MobiDBLite consensus disorder prediction 298 312 - -
Gso20g1547 844 MobiDBLite consensus disorder prediction 52 78 - -
Gso20g1547 844 Coils Coil 468 488 - -
Gso20g1547 844 MobiDBLite consensus disorder prediction 313 334 - -
Gso20g1547 844 MobiDBLite consensus disorder prediction 41 78 - -
Gso20g1547 844 CDD mRING-HC-C3HC5_NEU1 791 831 - -
Gso20g1547 844 Pfam Zinc finger, C3HC4 type (RING finger) 789 836 - -
Gso20g1547 844 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 844 - -
Gso20g1547 844 MobiDBLite consensus disorder prediction 433 465 - -
Gso20g1547 844 SUPERFAMILY RING/U-box 791 837 - -
Gso20g1547 844 MobiDBLite consensus disorder prediction 222 244 - -
Gso20g1547 844 MobiDBLite consensus disorder prediction 179 221 - -
Gso20g1547 844 MobiDBLite consensus disorder prediction 298 334 - -
Gso20g1547 844 MobiDBLite consensus disorder prediction 434 465 - -
Gso20g1547 844 Coils Coil 725 745 - -
Gso20g1547 844 MobiDBLite consensus disorder prediction 173 244 - -
Gso20g1547 844 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 1 844 - -
Gso20g1547 844 MobiDBLite consensus disorder prediction 649 695 - -
Gso20g1547 844 ProSiteProfiles Zinc finger RING-type profile. 792 831 IPR001841 -
Gso20g1547 844 MobiDBLite consensus disorder prediction 666 681 - -
Gso20g1547 844 MobiDBLite consensus disorder prediction 557 571 - -
Gso20g1547 844 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 771 842 IPR013083 -
Gso20g1547 844 MobiDBLite consensus disorder prediction 479 595 - -
Gso20g1547 844 MobiDBLite consensus disorder prediction 125 146 - -
Gso20g1547 844 MobiDBLite consensus disorder prediction 479 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1547 Gso-Chr20 46098329 46104720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1547 755 838 C3H Transcription Factor Family AT3G06140 33.333 6.53e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1547 - - gmx:100805607 1648.64