Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1541 ATGAACTGTCTTCAGAATCTTTCTCGATTCTCTGTTTTGCCCTTCGATACACTTGTTACGCGCCACCGCAAGAACCTTCCCCTTTCCCTGGGTTTCGTCAATAATTCTCATCAAAATCTAACTATGGCACTCAAGGCTGCCTCAGGTTCTATACCGAGTGCAGACACAAGTAGTGCCGATAAGGAGGAAGAAAAGTCTGAGACATATAGTCATAGCATGACAGAAGCCATGGGTGCTGTTTTGACTTATAGGCATGAATTAGGAATGAACTATAATTTCATCCGTCCAGACTTGATTGTGGGATCATGCCTACAGACTCCTGAAGATGTAGACAAGTTGTGTAGAATTGGAGTGAAAACTATATTTTGCTTACAACAAGATCCAGACCTTGAATATTTCGGAGTTGATATTAATGCCATACGAGAATATGCCAAGACATGCAATGACATTCAACACTTGCGTGCGGAGATAAGGGACTTTGATGCATTTGATCTACGGAGGCGGCTTCCAGCTGTAGTTAGCAAATTATACAAGGCAATAAATTCCAATGGAGGTGTAACATATATACATTGCACTGCTGGACTTGGAAGAGCTCCAGCTGTTGCGTTGGCTTATATGTTTTGGGTTTTGGGTTATAAACTTAACGAGGCTCATACACTACTTCAGAGCAAAAGGTCATGCTTTCCAAAACTGGATGCCATTAAAAGTGCAACAGCTGATATTCTTACAGGCCTCAGTAAGAAGTCTGTCACTTTGTCATGGGAAGGCAGCAATTGCTCTACGGTGGAAATTTCAGGACTTGATATTGGATGGGGGCAGAGAATACCCCTAAATTTTGATGACAAAGAGGGTTTGTGGTTTCTCAAGAGGGAATTGCCTGAAGGACTCTATGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAATACAGATGAGCTTGTAACCTCTCCCAACAAAGATGGCCATGTCAACAATTTTATTCAAGTCCTTGATGATACAAACAGAGTCCGTGCCTCCCTTCGGGAGAGATTGACCGGTGATGATCCTGATCTCACAACAGATGAACGACTGAGAATAAAGGAGTTTCTTGAAGCTTGTCCTGATGAGGATTAG 1116 0.4247 MNCLQNLSRFSVLPFDTLVTRHRKNLPLSLGFVNNSHQNLTMALKAASGSIPSADTSSADKEEEKSETYSHSMTEAMGAVLTYRHELGMNYNFIRPDLIVGSCLQTPEDVDKLCRIGVKTIFCLQQDPDLEYFGVDINAIREYAKTCNDIQHLRAEIRDFDAFDLRRRLPAVVSKLYKAINSNGGVTYIHCTAGLGRAPAVALAYMFWVLGYKLNEAHTLLQSKRSCFPKLDAIKSATADILTGLSKKSVTLSWEGSNCSTVEISGLDIGWGQRIPLNFDDKEGLWFLKRELPEGLYEYKYIVDGEWTCNTDELVTSPNKDGHVNNFIQVLDDTNRVRASLRERLTGDDPDLTTDERLRIKEFLEACPDED* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1541 371 Pfam Glycogen recognition site of AMP-activated protein kinase 250 332 IPR032640 -
Gso20g1541 371 ProSiteProfiles Dual specificity protein phosphatase domain profile. 90 247 IPR020422 GO:0006470|GO:0008138
Gso20g1541 371 Gene3D Protein tyrosine phosphatase superfamily 83 363 IPR029021 -
Gso20g1541 371 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 1 370 - -
Gso20g1541 371 SUPERFAMILY E set domains 249 331 IPR014756 -
Gso20g1541 371 CDD DSP_laforin-like 89 236 IPR045204 GO:0019203|GO:0046838
Gso20g1541 371 PANTHER PHOSPHOGLUCAN PHOSPHATASE DSP4, CHLOROPLASTIC 1 370 IPR030079 GO:0005982|GO:0007623|GO:0019203
Gso20g1541 371 MobiDBLite consensus disorder prediction 50 71 - -
Gso20g1541 371 SMART dsp_5 90 240 IPR020422 GO:0006470|GO:0008138
Gso20g1541 371 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 167 225 IPR000387 GO:0016311|GO:0016791
Gso20g1541 371 CDD E_set_AMPKbeta_like_N 249 330 - -
Gso20g1541 371 Gene3D Immunoglobulins 245 335 IPR013783 -
Gso20g1541 371 Pfam Dual specificity phosphatase, catalytic domain 133 228 IPR000340 GO:0008138|GO:0016311
Gso20g1541 371 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 87 232 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1541 Gso-Chr20 46005848 46013454 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1541 89 371 Protein tyrosine phosphatase (PTP) family AT3G52180 70.318 7.23e-152 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1541 - - gmx:100804010 748.814