Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1539 ATGGGTGAGATTCAAGAGAGCAAGGCTCTTGCAAAGAGCAAGCCTTCCACTGAACAGGACGTTACTGATGAGCTAGACCTAAGAATGAAGAAGTATCTCAGAGGAGAAGGTGCTAATTTGGAGGGTTTGAAGGATAAAAAGCTGAAGGGTCAACTAGCTGTTAAGGAAGACTTATATGGAAAATCTGCAAAAGCTGCTGCTAAGGCTGAGAAGTGGCTTATGCCCAGTGAAGGAGGCTATCTGGAGACCGAAGGCTTGGAGAAGACATGGAGGATCAAACAGGAGGCAATAGCTCGTGAAGTAGATATCTCAAGCTCAGGAAAACAATATGATATTATTTTACCAGAACTTGGTCCATACACTCTGGATTTTACTTCAAGTGGTCGGTATATGGCTGTGAGTGGTCGTAAGGGCCATCTGGGGATTGTGGACATGATAAATCTGAGCCTAATCAGAGAGTTTCAGGTAAGGGAAACAGTGCGTGATGTCGCATTCTTGCATAATGAGCTCTTTTTTGTTGCTGCTCAGAAAAAGTATCCATACATCTACAATCGAGAAGGCACAGAACTTCACTGTCTCAAGGAACATGGTCCAGTGTTAAGGCTTCAGTTTCTGGAAAACCATTTTCTCTTGGCTTCAATCAACAAGTTTGGACAACTTCGTTATCAGGATGTTACAATGGGTTCCATGGTTGGTAATTTTCGAACTGGCTTAGGACGTACAAATGTAATGCAAGTGAACCCCTTCAATGGGGTTGTTTCTTTAGGTCACTCAGGTGGTACTGTTACCATGTGGAAGCCAACCAGTGCTTCTCCTCTTGTCAAGATGTTATGTCATCATGGGCCTGTCTCAGCACTGGCATTTCATTCAAATGGCCACTTGATGGCCACTGCTGGGAAAGATAAAAAAATTAAGCTTTGGGACTTAAGGAAATTTGAGGTTCTTCAAACCTTACCAGGTCATGCAACTACTCTGGATTTTAGTCAAAAAGGCTTGCTTGCATGCGGTAATGGTTCATTGATCCGGGTTCTGCGTGATGTTTCTGGCACACAAAATTATTCTAAGTATATGACTCATTCCATGGTGAAAGGTTACCAGATAGGAAAATTGGTATTTCGACCATATGAAGATGTTCTAGGCATCGGGCATTCCATGGGCTGGTCTAGTATTCTTATTCCAGGAGCAGGAGAACCCAACTTTGACTCATGGGTTGCAAACCCATTTGAAACTTCTAAACAGAGGAGAGAAAAGGAAATACGGTCTCTTCTTGATAAGCTTCCACCTGAGACTATCATGCTGGATCCCAGCAAGATTGGTACGGTGAAACCAAGAAGAGAGAAGCCAACAAAGCAAGAGAGGGAGGCTGAAATAGAAGCTGACGTTGAAGCGGCTAAGGGCAAGAAACTGAAGAAGAAGACAAAAGGAAGAAACAAGCCAGGTAAAAGGGTACAGAAAAAGCAAGAGGCAGTTGCTAGAGTGAAGAGGCCCTACTTGGAGCAGAAAATTCAAGAAGAGGAAAGCATATCAAGAAAGAAGCAGAAGACTAGGGAGGGTGTTGAACTACCAAAATCTCTACAGCGGTTTGTTCGTAAAAAGGCTTCATCATGA 1608 0.4328 MGEIQESKALAKSKPSTEQDVTDELDLRMKKYLRGEGANLEGLKDKKLKGQLAVKEDLYGKSAKAAAKAEKWLMPSEGGYLETEGLEKTWRIKQEAIAREVDISSSGKQYDIILPELGPYTLDFTSSGRYMAVSGRKGHLGIVDMINLSLIREFQVRETVRDVAFLHNELFFVAAQKKYPYIYNREGTELHCLKEHGPVLRLQFLENHFLLASINKFGQLRYQDVTMGSMVGNFRTGLGRTNVMQVNPFNGVVSLGHSGGTVTMWKPTSASPLVKMLCHHGPVSALAFHSNGHLMATAGKDKKIKLWDLRKFEVLQTLPGHATTLDFSQKGLLACGNGSLIRVLRDVSGTQNYSKYMTHSMVKGYQIGKLVFRPYEDVLGIGHSMGWSSILIPGAGEPNFDSWVANPFETSKQRREKEIRSLLDKLPPETIMLDPSKIGTVKPRREKPTKQEREAEIEADVEAAKGKKLKKKTKGRNKPGKRVQKKQEAVARVKRPYLEQKIQEEESISRKKQKTREGVELPKSLQRFVRKKASS* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1539 535 Gene3D - 90 238 IPR015943 GO:0005515
Gso20g1539 535 Pfam WD domain, G-beta repeat 277 308 IPR001680 GO:0005515
Gso20g1539 535 MobiDBLite consensus disorder prediction 440 467 - -
Gso20g1539 535 SMART BING4CT_2 355 435 IPR012952 -
Gso20g1539 535 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 276 310 - -
Gso20g1539 535 PANTHER WD-REPEAT PROTEIN BING4 10 531 IPR040315 -
Gso20g1539 535 PANTHER BNAANNG36350D PROTEIN 10 531 - -
Gso20g1539 535 SUPERFAMILY WD40 repeat-like 116 383 IPR036322 GO:0005515
Gso20g1539 535 MobiDBLite consensus disorder prediction 1 23 - -
Gso20g1539 535 MobiDBLite consensus disorder prediction 440 535 - -
Gso20g1539 535 ProSitePatterns Trp-Asp (WD) repeats signature. 295 309 IPR019775 -
Gso20g1539 535 Gene3D - 239 363 IPR015943 GO:0005515
Gso20g1539 535 SMART WD40_4 106 144 IPR001680 GO:0005515
Gso20g1539 535 SMART WD40_4 227 266 IPR001680 GO:0005515
Gso20g1539 535 SMART WD40_4 147 184 IPR001680 GO:0005515
Gso20g1539 535 SMART WD40_4 269 308 IPR001680 GO:0005515
Gso20g1539 535 SMART WD40_4 311 345 IPR001680 GO:0005515
Gso20g1539 535 ProSiteProfiles Trp-Asp (WD) repeats profile. 276 317 IPR001680 GO:0005515
Gso20g1539 535 MobiDBLite consensus disorder prediction 482 527 - -
Gso20g1539 535 Pfam BING4CT (NUC141) domain 356 434 IPR012952 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1539 Gso-Chr20 45987477 45994166 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1539 160 350 U-box Gene Family AT2G33340 25.806 8.95e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1539 K14768 - gmx:100802940 1034.25