Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1537 ATGTTGGAAACGGAGAAGGATTTTGATTCCAAGCTGAAGATTCAGGGGAATTCCTCATCTTCCAATGGTGGTGGGAATGTACAGAGATCCAAAAGCTTTGCTTTTAGGGCTCCCCAGGAGAATTACACCATCCAGGACTTTGAATTGGGCAAGATCTACGGTGTTGGCTCTTATTCTAAGGTTGTGAGGGCAAAGAAGAAGGACACTGGAACTGTGTATGCATTGAAGATCATGGACAAAAAATTTATTACCAAAGAGAATAAAACAGCTTATGTGAAGTTGGAACGCATTGTGCTAGATCAATTGGATCATCCAGGCATTGTGCGGTTATATTTCACATTTCAAGACTCATTTTCTCTATACATGGCTCTTGAATCCTGTGAAGGTGGAGAACTTTTTGATCAAATAACCAGGAAAGGTCGTCTATCAGAGGATGAGGCACGATTCTATGCAGCTGAAGTTGTTGATGCTCTCGAATACATACATAATTTGGGAGTCATACATCGTGATATTAAGCCAGAGAACTTATTACTTACAGCTGAAGGACATATTAAAATAGCCGATTTTGGGAGTGTGAAGCCTATGCAGGATAGCCAAATAACTGTCCTTCCAAATGCAGCATCAGATGACAAAGCCTGCACTTTTGTGGGAACAGCTGCTTATGTTCCTCCAGAGGTTCTTAATTCCTCTCCAGCAACTTTTGGAAATGACCTTTGGGCACTTGGCTGCACATTATACCAAATGCTTTCTGGAACTTCCCCTTTTAAAGACGCGAGTGAATGGCTTATTTTTCAAAGAATTATAGCAAGAGATCTTAGATTTCCAGATTACTTTTCTGACGAAGCAAGAGACCTCATTGACCGCCTGTTGGATTTGGACCCCAGCAGGAGACCAGGTGCTGCACCTGATGGTTATGCTATTTTAAAAAGGCACCCATTTTTCAAGGGGGTTGACTGGGATAACTTGAGGGCACAAATTCCTCCAAAACTTGCTCCAGAACCTGGGACTCAGTCGCCTGTGGCTGATGATGTTCATGACTCATCTTGGAGTCCTTCTCACATTGGGGATGGTTCTGCAGCTTCGGTTAGACAACCTGATGGTGCTACATCTTCTGAGGGGACCGGTCACATAACTAGGCTAGCTTCAATTGATTCCTTCGATTCAAAATGGCAACAATTTTTGGAACCTGGGGAATCTGTTCTTATGATCTCTATGGTGAAGAAATTACAAAAACTAACAAGCAAGAAGGTGCAGCTCATCCTTACCAACAAACCAAAGTTGATCTATGTGGACCCATCAAAGCTAATTGTGAAGGGAAATATAATATGGTCTGATAATCCAAATGATTTAAGCATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACACCTAAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGCCAGTGGAAAAAGGCAATTGAAGGACTCCAAAACCGGTGA 1476 0.4214 MLETEKDFDSKLKIQGNSSSSNGGGNVQRSKSFAFRAPQENYTIQDFELGKIYGVGSYSKVVRAKKKDTGTVYALKIMDKKFITKENKTAYVKLERIVLDQLDHPGIVRLYFTFQDSFSLYMALESCEGGELFDQITRKGRLSEDEARFYAAEVVDALEYIHNLGVIHRDIKPENLLLTAEGHIKIADFGSVKPMQDSQITVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTLYQMLSGTSPFKDASEWLIFQRIIARDLRFPDYFSDEARDLIDRLLDLDPSRRPGAAPDGYAILKRHPFFKGVDWDNLRAQIPPKLAPEPGTQSPVADDVHDSSWSPSHIGDGSAASVRQPDGATSSEGTGHITRLASIDSFDSKWQQFLEPGESVLMISMVKKLQKLTSKKVQLILTNKPKLIYVDPSKLIVKGNIIWSDNPNDLSIQVASPSNFKICTPKKVMSFEDAKQRACQWKKAIEGLQNR* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1537 491 SMART serkin_6 47 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1537 491 MobiDBLite consensus disorder prediction 13 27 - -
Gso20g1537 491 SUPERFAMILY PH domain-like 308 490 - -
Gso20g1537 491 PANTHER SERINE/THREONINE-PROTEIN KINASE 21 487 - -
Gso20g1537 491 MobiDBLite consensus disorder prediction 1 27 - -
Gso20g1537 491 PANTHER 3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1 21 487 - -
Gso20g1537 491 Gene3D - 369 491 IPR011993 -
Gso20g1537 491 Pfam Protein kinase domain 49 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1537 491 Gene3D Transferase(Phosphotransferase) domain 1 131 333 - -
Gso20g1537 491 Pfam PH domain 388 490 IPR033931 -
Gso20g1537 491 ProSiteProfiles Protein kinase domain profile. 47 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1537 491 MobiDBLite consensus disorder prediction 341 375 - -
Gso20g1537 491 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Gso20g1537 491 SUPERFAMILY Protein kinase-like (PK-like) 44 352 IPR011009 -
Gso20g1537 491 CDD STKc_PDK1 45 314 IPR039046 GO:0004674
Gso20g1537 491 Gene3D Phosphorylase Kinase; domain 1 45 130 - -
Gso20g1537 491 MobiDBLite consensus disorder prediction 326 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1537 Gso-Chr20 45969329 45976889 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1537 1 491 AGC Kinase Gene Family AT3G10540 82.927 0.0 840
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_PDK1 Gso20g1537 Pkinase 1.7e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1537 K06276 - gmx:100801891 966.066