Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1530 ATGGATATGCCGATGAACCGCGCCACTCGAACAACGTCTCTCAGAGACGCCTCCGACTCCTCTAAGTTGGAAGGTACCGGTAGCTGGGACGCCATCGAATGGACCAAGATTGAGGGAAATGGTGTTGTTCTTGTTAATACAGATGATGCGGGCACGCTGATGGTAACCAATTTTCGTCTTATTTTTCTGAGCGAGGGAACTAGAAAAGTTATTGCCCTTGGAACAATACCTTTAGCAACCATTGAGAAGTTTATCAAGCCAGCTGTAAAGGTTCAGTCAAATACTCGCCATGTAGACAAGACACCAGCACAGAGACTGCTCCAGGTGATTGGAAAAGATATGAGAATTTTAGTCTTCAGTTTCAGGCCACGTACAAAACAGAGACATGTGGTATACGATGCGCTACTGAGGTGTACAAAGCCAACAAGACTATGGGATCTTTATGCTTTTGCATCAGGACCTTCTAGATTTAAGAACACTACTCCACTAGTGCGTTTATTGGATGAATATTTTCGACTTCTTTGCCTAGGTTCTTATCGTGCATCAATCAATATAATTGAAAACGGGTCCTTCACGTTGTCAAATGACCTATGGAGAATAAGTAGCGTGAATTCCGATTATACAATGTGCCAGAGTTATCCATTTGCTTTGGTTGTTCCAAAGATCATTAGTGATGATGAAGTGCTCCAGGCTAGTAGCTTCCGTGCAAGATGTCGACTACCTGTAGTTTCATGGTGCAATCCTTTGACTGGAGCAGTTGTTGCACGATCTTCTCAACCCTTAGTAGGTCTTATGATGAACATGAGGAGCAACATGGATGAAAAACTGGTGGGTGCACTTTGCAGCAAACTAGATAATGGCTCAAGGAGAAAGCTATATATTGTTGATGCACGGCCTAGGAAAAATGCATTGGCTAATGGTGCCATGGGAGGTGGTTCAGAATCATCATCAAACTATTTTCAATCCGAGATAGTCTTTTTGGGGATAGACAACATCCATGCGATGAGAGAGAGCTTTGTTCGGCTCCGAGAATACATGGACACTCATGGAAGAACGTCATCAGATGGAATGTCCTCTTTTTTGAGACAAGGTGGGTCAACATGGGGTGGTGGCAATCTAAGTAGTATGTCTGCTTCGGTATCAACCCTTGGGGACAGTGGATGGTTACTACATGTTCAGAATGTGTTGGCTGGTGCAGCTTGGATTGCTGCTCGTGTTGCAATGGAAAATGCTTCTGTTCTTGTGCATTGCAGTGATGGATGGGATAGGACAAGCCAGTTGGTTTCACTTGCTAATTTGTTGCTTGATCCATATTATCGGACATTCACAGGGTTTCAGGCACTCGTTGATAAAGACTGGCTTGCTTTTGGTCATCCATTTTCTGATCGGGTGGGAATGCCATCTGTCTCTGGAACTGGCAATGTGCCTTTCGAGTTATCTAGGCAGTCTTCAACTAGCAATTTCCCACCATCACCCATGCGCCAGTCATCAGGGACTTTTGTGTCGCAACCTCCAGCTTCATCTCACTCGCATAACTCCAACAACTATTCTCCCATTTTTTTGCAGTGGGTTGATTGTGTTTCGCAATTATTACGGATATATCCTTTTGCTTTTGAGTTTTCTGCGGCTTTCCTGGTGGACTTCGTAGACTGCATGCTTTCTTGTCGTTTTGGAAACTTCTTATGTAACAGTGAGAAGGAGAGGCAGCAATTCAATGTTTTCGAGGCATGTGGATGTCTGTGGGTATACTTGGCTGATTTGCGGACATCATCAGGAGGTTCCCATGTGCATTACAATCCCTTTTATGATCCACTGAAGCATAGTGGTCCTCTGCTGCCCCCAGCAGCAGCATTAGCCCCTACTTTGTGGCCCCAATTCCACCTTCGTTGGGCATGTCCAGAAGAAGCTCAAGCTGGGGAGATTGAAGCACAATGCAGGAAGATAGTTATGAAATATGCTGAGATGCAGAAGGCTAAAGAAATGGCAGAAAGGAAAGCTAAAGAAGTTACAAATTCCATGGAGTCGTTGAATGCTGAATTACGACGTGAGAAGCAGCTAAACAGCTCAGCTATGAACATGGCCAAGAGTATGAGCAAAGAAAATATGGCCATAAAGCGTGCAATTCAGTCAATGGGGTGCAAGGTTCATGTCTCTGGTAGTAGTGGTGAATGCATTGTTGATATTGAAAGCAACCCAGACATTCTGTGTTGTTCCTCTAGGAAAGAATCAAATAGTAATGTGCGTGATGACAAAAAGGATATGTCCGTTTCAGTAGTGATTACAGCAGGTGATGATGATGATGGAAACAATGCAATTGGTCGGGTATGTGAAACCCTATGCCCATTTCGCTTTGGAGATGGTCGGGTATGTGAAACCCTATGCCCATTTCGCTTTGGAGATGGAGGCTGCAGGTGGCCAAATGGTGGTTGTGCTCAACTAGGTAGCCAGTATGTTGGCCTGAAGGCAAATTTTGATGCATTTGACAAACTATCAATTGATGATAGTTATTTCAAGTCTGAGTGA 2523 0.4419 MDMPMNRATRTTSLRDASDSSKLEGTGSWDAIEWTKIEGNGVVLVNTDDAGTLMVTNFRLIFLSEGTRKVIALGTIPLATIEKFIKPAVKVQSNTRHVDKTPAQRLLQVIGKDMRILVFSFRPRTKQRHVVYDALLRCTKPTRLWDLYAFASGPSRFKNTTPLVRLLDEYFRLLCLGSYRASINIIENGSFTLSNDLWRISSVNSDYTMCQSYPFALVVPKIISDDEVLQASSFRARCRLPVVSWCNPLTGAVVARSSQPLVGLMMNMRSNMDEKLVGALCSKLDNGSRRKLYIVDARPRKNALANGAMGGGSESSSNYFQSEIVFLGIDNIHAMRESFVRLREYMDTHGRTSSDGMSSFLRQGGSTWGGGNLSSMSASVSTLGDSGWLLHVQNVLAGAAWIAARVAMENASVLVHCSDGWDRTSQLVSLANLLLDPYYRTFTGFQALVDKDWLAFGHPFSDRVGMPSVSGTGNVPFELSRQSSTSNFPPSPMRQSSGTFVSQPPASSHSHNSNNYSPIFLQWVDCVSQLLRIYPFAFEFSAAFLVDFVDCMLSCRFGNFLCNSEKERQQFNVFEACGCLWVYLADLRTSSGGSHVHYNPFYDPLKHSGPLLPPAAALAPTLWPQFHLRWACPEEAQAGEIEAQCRKIVMKYAEMQKAKEMAERKAKEVTNSMESLNAELRREKQLNSSAMNMAKSMSKENMAIKRAIQSMGCKVHVSGSSGECIVDIESNPDILCCSSRKESNSNVRDDKKDMSVSVVITAGDDDDGNNAIGRVCETLCPFRFGDGRVCETLCPFRFGDGGCRWPNGGCAQLGSQYVGLKANFDAFDKLSIDDSYFKSE* 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1530 840 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 187 631 IPR029021 -
Gso20g1530 840 ProSiteProfiles Myotubularin phosphatase domain. 178 627 IPR010569 -
Gso20g1530 840 MobiDBLite consensus disorder prediction 1 25 - -
Gso20g1530 840 ProSitePatterns Tyrosine specific protein phosphatases active site. 415 425 IPR016130 GO:0016311|GO:0016791
Gso20g1530 840 PANTHER PHOSPHATIDYLINOSITOL-3-PHOSPHATASE MYOTUBULARIN-1 787 839 - -
Gso20g1530 840 PANTHER PHOSPHATIDYLINOSITOL-3-PHOSPHATASE MYOTUBULARIN-1 36 786 - -
Gso20g1530 840 SUPERFAMILY PH domain-like 37 151 - -
Gso20g1530 840 Gene3D - 40 139 IPR011993 -
Gso20g1530 840 PANTHER MYOTUBULARIN-RELATED 787 839 IPR030564 -
Gso20g1530 840 PANTHER MYOTUBULARIN-RELATED 36 786 IPR030564 -
Gso20g1530 840 Pfam Myotubularin-like phosphatase domain 148 569 IPR010569 -
Gso20g1530 840 CDD PTP-MTM-like 238 529 - -
Gso20g1530 840 Coils Coil 652 693 - -
Gso20g1530 840 MobiDBLite consensus disorder prediction 480 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1530 Gso-Chr20 45858793 45872044 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1530 1 838 Protein tyrosine phosphatase (PTP) family AT3G10550 65.438 0.0 1110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1530 K18081 - gmx:100789349 1630.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1530 20 45858793 45872044 Gso20g1530 20 45858793 45872044 ECH
Gso20g1530 20 45858793 45872044 Gso10g1816 10 44790114 44804524 GST