Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1521 ATGGGTGATCCTTATGGGCTACCGGAGGATCTCCGGCGGCTTATACCAGCCAGAAGTACCCATTTGAACCCTTCAGACACACACCTAATTGAACCACTTTGTGTTCACCATGGTCTCAGTAGTGCTGTTGCTGCTGCTACTGCTAGTGCTACTCCACCCATCACCTATGACGCCAACATGGTTGGGGACGTTTTCTTCCCTCGTGGTTTCACTCATCACTTTGCTCATCACCATGACTATTCTTCTTCCTCTGGCGTAAACCCCGTTGCTACTACTGCTACTGCTACTGCTACTACTACTGTCTCGGATCATGCATTCTGCAGCATGGAAAGTGCAGAGAAAGGGTGGTTTGGGTTTGATTCCGGGAACAACAGGTGGCCTAGACAGGAGACCCTTTCTCTTCTAGAGATCAGATCTCGTCTTGATTCCAAGTTCAGAGAGAACAATCAGAAAGCACCCTTGTGGAATGAGATTTCTAGGATAATGGCTGAGGAATTTGGGTACCAAAGAAGTGGAAAGAAATGCAAAGAGAAATTTGAGAATTTGTACAAGTATTACAAGAAGACAAAAGAAGGTAAAGCTAGTAGACAAGATGGGAAGCACTACAGGTTCTTCAGGCAGCTAGAAGCAATATGTGGAGATCAAGCAAATAACACTCATGCTCATGCCTCAACTTCAGATAAAACCCATCGTGCTGGTGGAAACACTGCTGCTACTATTCAAAAACAAACCTTCACAACCAACCAAGACCACAATAATGGTGATTCTAACAATAACCCCAAATGCTCAGAGAGCCTCAGCATCTCAAATTCATCTCAATTCGAGACATCCTCATCAGAGAACAACGATGAGGATCTTTCAGCTATTGCATTCATGATGAAGCAGTCAAGGGATGAGAAGCAGAAAGGGTTGGATCATACTCATAGGCCAAGTGATCATAGGAGGGTGAGAAAAAGCTGGAGAACAAAAGTGGAGGAGATAGTGGATTCCCACATGAGGAAGATCATACAGACTCAAGATGCTTGGATGGAGAGAATGTTGAGTGTTGTTGAGCAAAGAGAGCAAGAGATGGCATCTAGGGAGGAAGAAAGGAAGAGAAAAGAGTCAATGTGGTTTGACCAACAGGTGCATGAACTGTGGGCCAAAGAGAAAGCATGGGTTGAGGCAAGAGATGCTGCATTGATAGAGGTTGTGAGGAAACACATTGGGATAGGGATAGGACTTGAAGCATTGCCATTGGTCGAAGAAGAATCACCGAATAAGAATAAGAGCCAGGGAAGTATTGATGCCAATGAGTTTCCCTCTGAGGGTGTTGATCCTGGTAGAAGTAGTAGTAGTAGGTGGACAGAAATGGAGATTTCAAATTTGATGCAGCTAAGGACTAGTTTTGAGCAAAGATTCAGAGAAAATAATAATGGGTACATGGAGAATGGGGTTTGGGATGAAATAGCAGCAAAAATGGCTTGTTTGGGGTTTGATAGGAGTGCAAGTGAGTGCAAGCAAATATGGGAAGAGATCAGCATCTCTCTCAGAAGGACAGTGGATGAGTGTGATGATGGTGCAAAAAGAAGGCCTTGGTATTTGGGACTTAAGCTGACGGATGATGATCTTTGA 1614 0.443 MGDPYGLPEDLRRLIPARSTHLNPSDTHLIEPLCVHHGLSSAVAAATASATPPITYDANMVGDVFFPRGFTHHFAHHHDYSSSSGVNPVATTATATATTTVSDHAFCSMESAEKGWFGFDSGNNRWPRQETLSLLEIRSRLDSKFRENNQKAPLWNEISRIMAEEFGYQRSGKKCKEKFENLYKYYKKTKEGKASRQDGKHYRFFRQLEAICGDQANNTHAHASTSDKTHRAGGNTAATIQKQTFTTNQDHNNGDSNNNPKCSESLSISNSSQFETSSSENNDEDLSAIAFMMKQSRDEKQKGLDHTHRPSDHRRVRKSWRTKVEEIVDSHMRKIIQTQDAWMERMLSVVEQREQEMASREEERKRKESMWFDQQVHELWAKEKAWVEARDAALIEVVRKHIGIGIGLEALPLVEEESPNKNKSQGSIDANEFPSEGVDPGRSSSSRWTEMEISNLMQLRTSFEQRFRENNNGYMENGVWDEIAAKMACLGFDRSASECKQIWEEISISLRRTVDECDDGAKRRPWYLGLKLTDDDL* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1521 537 SMART sant 444 509 IPR001005 -
Gso20g1521 537 SMART sant 122 185 IPR001005 -
Gso20g1521 537 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL-LIKE 37 516 - -
Gso20g1521 537 MobiDBLite consensus disorder prediction 297 318 - -
Gso20g1521 537 CDD GT1 446 513 - -
Gso20g1521 537 Coils Coil 350 370 - -
Gso20g1521 537 MobiDBLite consensus disorder prediction 245 282 - -
Gso20g1521 537 MobiDBLite consensus disorder prediction 416 447 - -
Gso20g1521 537 CDD GT1 124 190 - -
Gso20g1521 537 Gene3D - 448 512 - -
Gso20g1521 537 Gene3D - 126 188 - -
Gso20g1521 537 Pfam Myb/SANT-like DNA-binding domain 446 517 IPR044822 -
Gso20g1521 537 Pfam Myb/SANT-like DNA-binding domain 124 211 IPR044822 -
Gso20g1521 537 ProSiteProfiles Myb-like domain profile. 124 183 IPR001005 -
Gso20g1521 537 ProSiteProfiles Myb-like domain profile. 446 507 IPR001005 -
Gso20g1521 537 PANTHER - 37 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1521 Gso-Chr20 45759793 45762655 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1521 125 512 Trihelix Transcription Factor Family AT5G03680 42.786 1.53e-87 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gso20g1521 Myb_DNA-bind_4 4.7e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1521 - - gmx:100787750 1055.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1521 20 45759793 45762655 Gso10g1825 10 44909009 44912018 GST