Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1519 ATGATTTCTTCTGGGATTAACTTGGTGATGACTGTGATTGGGTTTGCGGTGAGCACCATGTTCATTGTTTTCGTCTGCACCAGGCTCATATGTGCACGAATTCACATGAATACTGCGAGGAGATCTTTTCCTATTGCATCCAGATCCAATCTCAGCATGATGGAGCGGGGTTGCCATGGTCTTGAACGTGTGACTGTAGCCAAATTTCCAACAAAGAAGTACAGTGACAAGTTTTTTGCTGCAGCAGAAAATTCTCAATGCACAGTCTGCCTCTCAGAATACCAAGGTGAGGATATGCTGCGTATCCTCCCCTATTGCGGACACTCCTTCCATGTGACCTGCATAGACTTATGGCTGCAGCAGAATTCCACTTGTCCTGTTTGTCGAATATCGTTGCGTGAATTTCCCGAAAGAAAGCTGTTAATGCAACCCTTGTTCAGCTCAGCTTTGCAACCTCACTATGGCATAGAATCCTTTGACACGCATCATTATCACTGTATGATGGCTGATAACGGATTATCATCAAGAACCCCTGACAACCTTGGGGTGAATCCTATAGAAGAAGATCATTTTCCATCCGAGGGTGGTGGAGCAGTTGCTATGGACAATATTACCTGTTTAAGTGAGGGTGACTTCATTAAAGAAGAAGGGAAGAAGCATGTAGAGAGTCCATCAAACTTCCAGATTTGA 690 0.4435 MISSGINLVMTVIGFAVSTMFIVFVCTRLICARIHMNTARRSFPIASRSNLSMMERGCHGLERVTVAKFPTKKYSDKFFAAAENSQCTVCLSEYQGEDMLRILPYCGHSFHVTCIDLWLQQNSTCPVCRISLREFPERKLLMQPLFSSALQPHYGIESFDTHHYHCMMADNGLSSRTPDNLGVNPIEEDHFPSEGGGAVAMDNITCLSEGDFIKEEGKKHVESPSNFQI* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1519 229 PANTHER OS11G0150450 PROTEIN 1 226 - -
Gso20g1519 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 134 IPR013083 -
Gso20g1519 229 PANTHER OS11G0150450 PROTEIN 1 226 - -
Gso20g1519 229 CDD RING-H2_PA-TM-RING 86 129 - -
Gso20g1519 229 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Gso20g1519 229 SUPERFAMILY RING/U-box 81 135 - -
Gso20g1519 229 Pfam Ring finger domain 86 129 IPR001841 -
Gso20g1519 229 SMART ring_2 87 128 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1519 Gso-Chr20 45742180 45745314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1519 45 143 C3H Transcription Factor Family AT4G10150 41.414 4.38e-20 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1519 - - gmx:100794979 476.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1519 20 45742180 45745314 Gso10g1827 10 44932515 44935673 GST