Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1511 ATGGAACTTCTCTCTGTGTCTGTCTCACTTAGCAAATGCCAAACATTATCCTTTCCGAAACCAAAGGCACCCCAAATTCACGAACTTCCATTAAACATTAGATTACCCAACAAAACAAATCATTTCAGTCTTTCATCATCTTCTTCTCCTTGTTGTAATTGGTCCATTACTAGGGTAGCAGCAGCAACAACATACCCTTCCTTCAATCCTTCCACCACTCAGAACCCTCACTGGATGGTGCTCATGGACACGCCTCCTCAAGGGGTCAATTCCAAGCCACAAGTCATTGATTATTACGTGAAAACTCTGCAAACCGTTCTTGGCAGTGAGAAAGATGCTCAAATGTGTATATATGATGCTTCATGGAACACTCACTTCGGTTTTTGTTGTGACATTGATGAAGAAATATCCTCCCAGCTGGCCAGTTTACCTGAGGTCTTGTTGGTTAGGCCTGACCTGGATTTCAACTCTTTGAAAAAAGACTATAGTTTATCAAGTGGCGAGGCAGGCCACCTATCAGGATTACGAACTAGAACTAATATGTTGTTCCCTGCTGGAAATTCAAAGCATTGGCTTGTTAAAATGGATAAGCCCGGGGTTGAGGCTGTTACCAAGGCTCAGATTGTTGATTATTATGCTCAAATTTTGACCAAGGTCATGGGAAATGAGAAGGATGCACAGATGTGTATATATCATGTTTCCTGGAAAACCAACTTCGGTTTTTGCTGTGAACTTGATGAGGATTGTGCACAAGAGCTTGCTGGTGTGCTAGGTGTCTTGTCAGTTCAGCCAGATAACAATTTTGAGTCTGAAAATAAGGATTATGCAGGCAGTAACTTAGAAAATAGTTGGAATGTGTCCAACTCTTCTGAAGCAAGTCAGGAAGCTCCCTTGAAAACAAAGAAACTTTTTGTGACAGGGCTATCGTTTTATACATCTGAGAAAACCTTGCGTGCAGCATTTGAAGGCTTTGGCGAGTTAGTTGAAGCTTTTACTAGCAAATGGTTATGCTTGGCAGTTAAAGTTATTATGGACAAAATTTCAAAAAGGTCCAAGGGTTATGCATTTGTTGAATACACCACAGAGGAGGCTGCAAGTGCAGCACTCAAAGAGATGAATGGCAAGATTATCAATGGCTGGATGATAGTGGTAGATGTTGCCAAGCCTAACCCACCAAGATACCACAGGAATCATGCTGGATGA 1203 0.4173 MELLSVSVSLSKCQTLSFPKPKAPQIHELPLNIRLPNKTNHFSLSSSSSPCCNWSITRVAAATTYPSFNPSTTQNPHWMVLMDTPPQGVNSKPQVIDYYVKTLQTVLGSEKDAQMCIYDASWNTHFGFCCDIDEEISSQLASLPEVLLVRPDLDFNSLKKDYSLSSGEAGHLSGLRTRTNMLFPAGNSKHWLVKMDKPGVEAVTKAQIVDYYAQILTKVMGNEKDAQMCIYHVSWKTNFGFCCELDEDCAQELAGVLGVLSVQPDNNFESENKDYAGSNLENSWNVSNSSEASQEAPLKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEAFTSKWLCLAVKVIMDKISKRSKGYAFVEYTTEEAASAALKEMNGKIINGWMIVVDVAKPNPPRYHRNHAG* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1511 400 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 61 156 IPR037045 -
Gso20g1511 400 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 183 269 IPR037045 -
Gso20g1511 400 SUPERFAMILY RNA-binding domain, RBD 281 397 IPR035979 GO:0003676
Gso20g1511 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 303 379 IPR000504 GO:0003723
Gso20g1511 400 SMART rrm1_1 302 385 IPR000504 GO:0003723
Gso20g1511 400 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 30 399 IPR039206 GO:0016554
Gso20g1511 400 Gene3D - 270 400 IPR012677 -
Gso20g1511 400 PANTHER ORGANELLE RRM DOMAIN-CONTAINING PROTEIN 1, CHLOROPLASTIC 30 399 - -
Gso20g1511 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 301 389 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1511 Gso-Chr20 45654612 45658399 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1511 293 393 C2H2 Transcription Factor Family AT2G19380 30.693 1.17e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1511 - - gsj:114401692 813.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1511 20 45654612 45658399 Gso10g1669 10 43269594 43272281 GST