Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1508 ATGTATTTTTTCACTGAGAAAATGCAGAGTTTGAAGATGGGATTCCCTGACTACATCCAAACATTAGAAGAAGAACGCCGTAAGATTCAGGTGTTCTCCAAAGAGCTTCCTCTTTCCTTGGAACTGGTTACTCAAGCCATTGAAACTTGCAAGCAGCAATTGTCTGGAACTACGAGTGAGTATAATTTGAATGGCCACTCGGAGTGTTCGGAGCAGACAACGTCAACGGAAGGGCCTGTTTTGGAGGAGTTTATTCCAATCAAGAAAAGGGCATCATCATCATCCCCTTGTTGTGATGAAGATGATGAGCAACATTCTCACAAGCAAAGGGTTTCAAAGGAAAATAATAACAGTGATAAGAGGAAATCAGACTGGCTTAGATCTGTTCAGTTGTGGAATCCAGATCCCCCAGCTGAGGAGGATGTGAGTAAGATAGTGTGTGGGGTGGAACTGAAGAGAAGTGGAAGTGGTGGTGGTGCTTTCCAGCCACTCCACAAGGAAGAAAAAAGTTCAAAGCCAAGTGAATCATTGAGTAAAACACCCTCTTCAACCCCGGTAGTTGCGACGAGTTCTAGCGCTGTAGAACCCGCAGAAGAAAAATCTCTGAATGAGGGACAGAGAAAGCTTCGCAGGTGCTGGTCACAGGACTTGCATAAGCGCTTCTTGCATGCCCTTCAGCAGCTTGGGGGTGCAGATTCTGCCACACCAAAGCAAATCAGAGAGCTGATGAATGTTGATGGCCTCACAAATGATGAAGTCAAAAGCCATTTGCAGCCTAATAGAAACAAGGAAAATGACTTAAACAAGACAATCATCCACTAA 822 0.4453 MYFFTEKMQSLKMGFPDYIQTLEEERRKIQVFSKELPLSLELVTQAIETCKQQLSGTTSEYNLNGHSECSEQTTSTEGPVLEEFIPIKKRASSSSPCCDEDDEQHSHKQRVSKENNNSDKRKSDWLRSVQLWNPDPPAEEDVSKIVCGVELKRSGSGGGAFQPLHKEEKSSKPSESLSKTPSSTPVVATSSSAVEPAEEKSLNEGQRKLRRCWSQDLHKRFLHALQQLGGADSATPKQIRELMNVDGLTNDEVKSHLQPNRNKENDLNKTIIH* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1508 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 205 265 IPR017930 -
Gso20g1508 273 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 261 IPR044787 GO:0003700|GO:0006355
Gso20g1508 273 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 1 261 - -
Gso20g1508 273 MobiDBLite consensus disorder prediction 94 122 - -
Gso20g1508 273 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 208 263 IPR006447 GO:0003677
Gso20g1508 273 MobiDBLite consensus disorder prediction 154 206 - -
Gso20g1508 273 MobiDBLite consensus disorder prediction 175 197 - -
Gso20g1508 273 SUPERFAMILY Homeodomain-like 206 262 IPR009057 -
Gso20g1508 273 MobiDBLite consensus disorder prediction 91 122 - -
Gso20g1508 273 Gene3D - 207 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1508 Gso-Chr20 45616524 45619433 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1508 4 262 G2-like Transcription Factor Family AT1G25550 49.057 1.27e-73 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gso20g1508 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1508 - - gmx:100789537 486.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1508 20 45616524 45619433 Gso10g1839 10 45079322 45081943 GST