Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1506 ATGCAGAAAACATACTCTTTCTCCTGCATATCCTCTTGTGGAAGTGATAGTGCCTGCTTAGAAGCTGACGAAGTTAACAATGAAGATTCCATTTCCCTCTCCCTTGGCCCTCCTAGTCAGCACAAATTCAAATCCAGAGCCTCTAACCCAAAACACTCTTCTACTATGCGTGATCATCAGCAAAAACCTAGCTCCGATGACCTGAGTGGTGTAACAGTGGCCCTCCACATTGGTCTTCCCACCCCCACCGCTGCCACCAAACCTTCTTCCCCTCCAATTCACGGTCGATATTGGATCCCTACTCCTCAACAAATCCTCATTGGACCCACCCAGTTTTCTTGCACAGTCTGTAACAAAACCTTCAACCGTTTCAACAACATGCAGATGCATATGTGGGGACATGGATCCCAGTATAGGAAAGGATCGAATTCATTGAGAGGGTCAAAAGCAGGTTCTCTAATGCTGAGGCTACCCTGCTATTGCTGTGAAGAAGGTTGCAAAAACAACATAAACTATCCAAGGTCAAAGCCACTGAAGGATTTCAGGACCCTCAAAACACACTACAAGAGGAAGCATGGAGAGAAGCCATTCGAGTGCAGGAAGTGTCACAAGCCATTTGCAGTAAGAGGAGATTGGAGAACACACGAGAAGAATTGTGGGAAACTTTGGTTCTGCGTCTGTGGTTCTGATTTCAAGCATAAGAGGTCCCTTAAAGACCATGTTCGTGCATTCGGCAATGGCCATGCTTCACATAACTTGAGTGAAGAAAGAGGGGACGAAGGTGGAGATGATGACAGTGAAGTGGCTGTTTTTACTTTCAAATAA 825 0.4582 MQKTYSFSCISSCGSDSACLEADEVNNEDSISLSLGPPSQHKFKSRASNPKHSSTMRDHQQKPSSDDLSGVTVALHIGLPTPTAATKPSSPPIHGRYWIPTPQQILIGPTQFSCTVCNKTFNRFNNMQMHMWGHGSQYRKGSNSLRGSKAGSLMLRLPCYCCEEGCKNNINYPRSKPLKDFRTLKTHYKRKHGEKPFECRKCHKPFAVRGDWRTHEKNCGKLWFCVCGSDFKHKRSLKDHVRAFGNGHASHNLSEERGDEGGDDDSEVAVFTFK* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1506 274 PANTHER ZINC FINGER PROTEIN WIP2 1 265 IPR043584 GO:0003700|GO:0010468
Gso20g1506 274 MobiDBLite consensus disorder prediction 29 68 - -
Gso20g1506 274 Gene3D Classic Zinc Finger 156 244 - -
Gso20g1506 274 SMART c2h2final6 197 217 IPR013087 -
Gso20g1506 274 SMART c2h2final6 112 134 IPR013087 -
Gso20g1506 274 SMART c2h2final6 160 192 IPR013087 -
Gso20g1506 274 Gene3D Classic Zinc Finger 111 134 - -
Gso20g1506 274 MobiDBLite consensus disorder prediction 248 267 - -
Gso20g1506 274 ProSitePatterns Zinc finger C2H2 type domain signature. 114 134 IPR013087 -
Gso20g1506 274 MobiDBLite consensus disorder prediction 29 44 - -
Gso20g1506 274 SUPERFAMILY beta-beta-alpha zinc fingers 88 133 IPR036236 -
Gso20g1506 274 SUPERFAMILY beta-beta-alpha zinc fingers 183 217 IPR036236 -
Gso20g1506 274 ProSiteProfiles Zinc finger C2H2 type domain profile. 112 139 IPR013087 -
Gso20g1506 274 PANTHER ZINC FINGER PROTEIN WIP6 1 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1506 Gso-Chr20 45600319 45601686 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1506 27 255 C2H2 Transcription Factor Family AT1G13290 67.797 1.26e-112 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso20g1506 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1506 - - gmx:100784037 573.933