Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1505 ATGGATGGAGGCAGTGTCACAGACGAAACCACCACAACCAGCAACTCTCTTTCCGTTCCGGCGAATCTATCTCCGCCGCCTCTCAGCCGTGTCGGCAGCGGCGCAACCGCCGTCGTCTACCCCGACGGTTGTTGCGTCTCCGGCGAAGCCGAATCCCGGAAACTCCCGTCCTCGAAATACAAAGGCGTGGTGCCGCAACCGAACGGTCGTTGGGGAGCTCAGATTTACGAGAAGCACCAGCGCGTGTGGCTCGGCACCTTCAACGAGGAAGACGAAGCCGCCAGAGCCTACGACATCGCCGCGCATCGCTTCCGCGGCCGCGACGCCGTCACTAACTTCAAGCCTCTCGCCGGCGCCGACGACGCCGAAGCCGAGTTCCTCAGCACGCATTCCAAGTCCGAGATCGTCGACATGCTCCGCAAGCACACCTACGACAACGAGCTCCAGCAGAGCACCCGCGGCGGCAGGCGCCGCCGGGACGCCGAAACCGCGTCGAGCGGCGCGTTCGACGCGAAGGCGCGTGAGCAGCTGTTCGAGAAAACCGTTACGCCGAGCGACGTCGGGAAGCTGAACCGATTAGTGATACCAAAGCAGCACGCGGAGAAGCACTTTCCGTTAAGCGGATCCGGCGGCGGAGCCTTGCCGTGCATGGCGGCGGCTGCGGGGGCGAAGGGAATGTTGCTGAACTTTGAGGACGTTGGAGGGAAAGTGTGGCGGTTCCGTTACTCGTATTGGAACAGTAGCCAGAGCTACGTGCTTACCAAAGGATGGAGCCGGTTCGTTAAGGAGAAGAATCTTCGAGCTGGTGACGCGGTTCAGTTCTTCAAGTCGACCGGACTGGACCGGCAACTATATATAGACTGCAAGGCGAGGAGTGGTAAGGTTAACAATAATGCTGCCGGTTTGTTTATTCCGGTTGGACCGGTTGTTGAGCCGGTTCAGATGGTACGGCTTTTCGGGGTCGACCTTTTGAAACTACCCGTACCCGGTTCGGATGGTATTGGGGTTGGCTGTGACGGGAAGAGAAAAGAGATGGAGCTGTTTGCATTTGAATGTAGCAAGAAGTTAAAAGTAATTGGAGCTTTGTAA 1089 0.584 MDGGSVTDETTTTSNSLSVPANLSPPPLSRVGSGATAVVYPDGCCVSGEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAHRFRGRDAVTNFKPLAGADDAEAEFLSTHSKSEIVDMLRKHTYDNELQQSTRGGRRRRDAETASSGAFDAKAREQLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLSGSGGGALPCMAAAAGAKGMLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDAVQFFKSTGLDRQLYIDCKARSGKVNNNAAGLFIPVGPVVEPVQMVRLFGVDLLKLPVPGSDGIGVGCDGKRKEMELFAFECSKKLKVIGAL* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1505 362 MobiDBLite consensus disorder prediction 146 166 - -
Gso20g1505 362 Gene3D - 166 301 IPR015300 -
Gso20g1505 362 Pfam AP2 domain 58 106 IPR001471 GO:0003700|GO:0006355
Gso20g1505 362 MobiDBLite consensus disorder prediction 1 28 - -
Gso20g1505 362 MobiDBLite consensus disorder prediction 1 23 - -
Gso20g1505 362 SMART rav1_2 59 120 IPR001471 GO:0003700|GO:0006355
Gso20g1505 362 SMART B3_2 178 291 IPR003340 GO:0003677
Gso20g1505 362 CDD B3_DNA 177 286 IPR003340 GO:0003677
Gso20g1505 362 Gene3D AP2/ERF domain 58 115 IPR036955 GO:0003700|GO:0006355
Gso20g1505 362 Pfam B3 DNA binding domain 178 275 IPR003340 GO:0003677
Gso20g1505 362 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 362 IPR044800 GO:0003700
Gso20g1505 362 ProSiteProfiles B3 DNA-binding domain profile. 178 292 IPR003340 GO:0003677
Gso20g1505 362 ProSiteProfiles AP2/ERF domain profile. 59 114 IPR001471 GO:0003700|GO:0006355
Gso20g1505 362 MobiDBLite consensus disorder prediction 146 165 - -
Gso20g1505 362 CDD AP2 58 113 IPR001471 GO:0003700|GO:0006355
Gso20g1505 362 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 1 362 - -
Gso20g1505 362 SUPERFAMILY DNA-binding domain 58 114 IPR016177 GO:0003677
Gso20g1505 362 SUPERFAMILY DNA-binding pseudobarrel domain 176 292 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1505 Gso-Chr20 45580780 45582257 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1505 5 362 B3 DNA Binding Superfamily AT1G25560 58.398 7.65e-139 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Gso20g1505 B3 5.8e-26 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1505 K09287 - gmx:100789009 705.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1505 20 45580780 45582257 Gso10g1841 10 45101435 45102996 GST