Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1501 ATGCTAAAGACGATTTTGAATCTCTCACACTTGATTGCATCATTCTCCGACCTCTTTCCTATGGCAGGACCATCGTGGTTGGTGGACAAAAGTAGAATTGCAACCAAAATAAAGAGTGCCTCTGGAACATGTGGTAAAGTTATATGGAAAAGCAATCCTTCCAGAGCTTGCCCAAGCTGTCACCATGTTATTGACAACAGTGATGTAGCACAAGAATGGCCTGGACTACCTATAGGTGTTAAATTTGATCCATCTGATCAAGAGATAATTTGGCACTTGCTTGCAAAAGTTGGTGCTGGAAATTCAAAACCCCACCCTTTCATTGATGAATTTATTACTACTCTTGAAGTGGATGATGGGATTTGTTATACTCATCCTCAACATTTACCAGGTGTCAAGCAAGATGGAAGTTCTTCTCACTTTTTCCATCGAGTAATCAAGGCGTATAATACTGGCAGTCGAAAGCGTCGAAAAATATGTGGTCAGGATTTTGGTGATGTCCGCTGGCACAAGACTGGAAGGACTAAACCTGTCATCTTGAATGGGATCCAGAAAGGCTGTAAAAAGATTATGGTCCTGTATATAAGCCCAGTGAGAGGAGGAAAATCTGAGAAAACTAATTGGGTTATGCATCAATATCATTTAGGAACAGAAGAGGATGAAAAGGATGGAGAGTATGCCATCTCTAAAGTGTTTTACCAGCAGCAGCAAGTCAAATTTGGTGAAAAAGATGACCAGGATATTCCTGAAATCACTGAAGCAACTACAGTTAAAGTGGATCCAGCCACTCCCAAATCTGTGACTCCTGAACCTCCTCGTATTGAAAAGCGATGTTCAAATCTAGACCTAGGACAAGAATCACATCACATTCCTCAGCATCCTCAGACAGATTATTTAGATGACCTTCAGGCTGTTTGTGAAGATCTTGCAAAAGATGATCTATTGATAGTAGAAACTCAAAATAATGAAGCGATAGATAATATAGAAAACAATGCTGAGGAAGACTCAAAATGGTGGGATAGTGAGTCACAGAATCTGTTGAGCTCACAACAACTTGTCGAAGCATTGTTCTTGTGTGATGATCTCCTTCAAAGTCAATCTCCCAAGAGGGATGAGGAAAATGAACACAAGAAACGACCCAGTCTTTCTGTTTATGCTGATCTAGGACCAGAGCATCTGAAGAAAGATATCGAAGAGTGTCAAAATCTTGTCCTTGACCCTGCAAATGTAGTGCCTGAGACACCACCTTCAGAATTTCGACTAAGTCAGCTGGATTTCAGTTCACAGGATAGCTTTGTTTCCTGGTGTGCCAACAAAGCAATCGACTAA 1329 0.4086 MLKTILNLSHLIASFSDLFPMAGPSWLVDKSRIATKIKSASGTCGKVIWKSNPSRACPSCHHVIDNSDVAQEWPGLPIGVKFDPSDQEIIWHLLAKVGAGNSKPHPFIDEFITTLEVDDGICYTHPQHLPGVKQDGSSSHFFHRVIKAYNTGSRKRRKICGQDFGDVRWHKTGRTKPVILNGIQKGCKKIMVLYISPVRGGKSEKTNWVMHQYHLGTEEDEKDGEYAISKVFYQQQQVKFGEKDDQDIPEITEATTVKVDPATPKSVTPEPPRIEKRCSNLDLGQESHHIPQHPQTDYLDDLQAVCEDLAKDDLLIVETQNNEAIDNIENNAEEDSKWWDSESQNLLSSQQLVEALFLCDDLLQSQSPKRDEENEHKKRPSLSVYADLGPEHLKKDIEECQNLVLDPANVVPETPPSEFRLSQLDFSSQDSFVSWCANKAID* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1501 442 Pfam No apical meristem (NAM) protein 77 215 IPR003441 GO:0003677|GO:0006355
Gso20g1501 442 PANTHER SUPPRESSOR OF GAMMA RESPONSE 1 21 436 - -
Gso20g1501 442 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 21 436 IPR044799 GO:0003700
Gso20g1501 442 ProSiteProfiles NAC domain profile. 76 234 IPR003441 GO:0003677|GO:0006355
Gso20g1501 442 SUPERFAMILY NAC domain 61 234 IPR036093 GO:0003677|GO:0006355
Gso20g1501 442 Gene3D NAC domain 85 239 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1501 Gso-Chr20 45537186 45542122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1501 48 241 NAC Transcription Factor Family AT1G28470 56.500 5.07e-71 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso20g1501 NAM 1.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1501 - - gmx:100787422 885.56