Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1499 ATGCTGGTTCGGAGGAGGGTGATGAGTTGGAGAAGGGTGGCGAAGGCCCTTCAGGCTCTGGTAGCTCATGTCTTACTTTTCTCCTTCACTATTTCCCTTGCTCTCAAGCTTGACCATGTCATTCGTCACTCATGGTGGAAGGTATTTTTTCCTCTATGGGTTTTTCATGCTGTGGTAGCACGAGGCAGGTTTTCCTTGCCCGCTCCTTCGATGCCTCATGATCGCCGATGGGCTCCTTTTCATTCACTCGTAGCAACTCCTCTACTTGTTGCATTTGAGCTACTTCTTTGTATGCATCTCGGGAGCAGTTATGTGATGAATTTAAGAATTGTCTTCATGCCCCTGATATTTCTTGAAATGGCGATTTTGTTTGATAATGTCAGGATGTGTAGGGCTTTGATGCCTGGAGATGATGAAAATTTGACCGACGAAGCAGTATGGGAAACTCTTCCGCACTTCTGGGTTTCAATATCCATGGTCTTCTTTATTGCTGCCACAGTGTTCACCCTTCTAAAGATATGTGGTGATGTTGCAGCTCTAGGGTGGTGGGACTTGTTTATTAACTTCGGCATTGCACAGTGCTTTGCGTTTCTTGTTTGTACAAAGTGGCACAATCCAACTATTCATGGAGGCTGTCATATTACAGAACCGTGTTCATCATCAAATACCATAAGATACCTAGACTTGAGGACAGGAGGCTTAGTTGTTTACACAGATGAAGATAGACAGCAAAATGGGTTCTGCAATCTGCAGGATATCGGCAGCCATATTATGAAAATTCCATTCATTGGTTTCCAAATACTTCTTTTTATGCATTTAGAGGGAACACCATCCAGTGCAAAAAATCTGCCACACTGGGTCATTATTTCCCCACTATTTTTGTTGCAAGGAGCTGGGGTTTTATTTGCAGCTTATAGATTAATAGAGAAGATAGTTCTTTTACTCTACATTGGAGATATTCCTGAAAGATACTCAGCTATAGCATCAAAATCCCGTGATTGCTTTGGGTTCTTTCGATGTGGGTCAAGGTTGCTTGGTTGGTGGTCAATAGATGAAGGAAGTAGAGAGGAAGAAGCTAGACTTTTTTGTGCTGGGAGTCCTGGGTATAATACTTTCACCCCTGAGACGGTGAAGAAAATGCCTAGAACAGATCTGGTTGAGGAGATTTGGAGACTACAAGCTGCACTGGGTGAGCAGACACACGTTACAAAATTTAGCCAGGAGGAGTATGAAAGACTTCAAAATGAGAAGATCTTATGCAGAATTTGCTTTGAGGAGCAGATCAACGTGGTCCTACTTCCCTGCAGGCATCACATTCTTTGTAGCACTTGCTGCGAAAAATGTAAAAGGTGCCCTGTCTGCCGTGGATCCATTGAAGAAAGGATGCCTGTATATGATGTATAG 1404 0.433 MLVRRRVMSWRRVAKALQALVAHVLLFSFTISLALKLDHVIRHSWWKVFFPLWVFHAVVARGRFSLPAPSMPHDRRWAPFHSLVATPLLVAFELLLCMHLGSSYVMNLRIVFMPLIFLEMAILFDNVRMCRALMPGDDENLTDEAVWETLPHFWVSISMVFFIAATVFTLLKICGDVAALGWWDLFINFGIAQCFAFLVCTKWHNPTIHGGCHITEPCSSSNTIRYLDLRTGGLVVYTDEDRQQNGFCNLQDIGSHIMKIPFIGFQILLFMHLEGTPSSAKNLPHWVIISPLFLLQGAGVLFAAYRLIEKIVLLLYIGDIPERYSAIASKSRDCFGFFRCGSRLLGWWSIDEGSREEEARLFCAGSPGYNTFTPETVKKMPRTDLVEEIWRLQAALGEQTHVTKFSQEEYERLQNEKILCRICFEEQINVVLLPCRHHILCSTCCEKCKRCPVCRGSIEERMPVYDV* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1499 467 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 3 467 - -
Gso20g1499 467 Pfam Zinc finger, C3HC4 type (RING finger) 418 460 - -
Gso20g1499 467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 396 466 IPR013083 -
Gso20g1499 467 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 3 467 - -
Gso20g1499 467 Pfam Transmembrane Fragile-X-F protein 35 295 IPR019396 -
Gso20g1499 467 ProSiteProfiles Zinc finger RING-type profile. 420 455 IPR001841 -
Gso20g1499 467 SUPERFAMILY RING/U-box 411 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1499 Gso-Chr20 45518010 45525424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1499 8 467 C3H Transcription Factor Family AT1G73950 63.034 0.0 587
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1499 - - gmx:113000756 968.378
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1499 20 45518010 45525424 Gso10g1846 10 45154920 45163621 GST